| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1808 |
|---|
| Symbol | |
|---|
| ID | 6287307 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 1898783 |
|---|
| End bp | 1900315 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642625371 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_001899377 |
|---|
| Protein GI | 187928890 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
|---|
| COG ID | [COG0845] Membrane-fusion protein
[COG5569] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.034543 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.527092 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC AGATTATCGC CACGGCGGCC GGCCTCGCCA TTCTCGGCGC CGCGATGTAT
GGCGCTTACC ACTTCGGCGT CACGCAGGGA GCACGGTCGG CACAATCGTC GGCGCCGGCC
AGCGCGGCAT CCGGTCTCAA GGCCGGCGAC GTCGATCCCA AGACCGGCAA AAAGGTACTG
TACTGGCACG ACCCCATGGT GCCCGGACAG CGTTTCGACA AGCCGGGCAA ATCCCCCTTC
ATGGACATGC AGTTGGTGCC GGTCTATGCG GACGGGGATA GCGGTGCCAG CGGCATCACG
GTCGATAGCC GTGTCGCGCA AAACCTCGGC ATCCGCACGG CCGAAGTCAA AGCCGGCCGG
TTGAGCACGG TACTGGAGGC GCCCGGCAAC ATCGTCATCG ACGAGCGCAG CGTGCAAGTA
ATCCAGGCGC GCACGAACGC CTTCGTCCAG CACGTCGCGG TCAGGGCGAC GCTTGACCCA
GTTCGGCGTG GGCAGGCACT GGTGACTCTG TATTCGCCGG ACTGGGTGGC GGCCCAGGAA
GAGTATCTGG CCGTGTTGCG CCAGTCGGCA CACGGTCAGG CCGATCTCGC CAGTGCGGCC
AAGGCGCGCA TGCTGCAGAC CGGCATGACG CCCGGGCAGG TCAGCGCCGT CGAGGCATCC
GGACGGCTGC AGCCCAGCGT GGGCATCGCG AGCCCCATCG ATGGCATCGT GACCGAGGTC
GCGGTGCGAG ACGGGATGAC AGTCTCGCCC GGCATGACTC TGTTCCGTCT GGCCGACTTA
AGCCAGGTCT GGGTGGTTGC CGAGGTGCCG GAAGGCCAGG CCCGCACCAT TGCGCCCGGC
CTGGCGGTCA AGGTGACACC GACCGGGGCG GCCGAGCCGC TGGTCGGCAA GGTCGACACC
GTGTTGCCCG ACGTCAACCC GGCGACGCGG ACCATCAAGG TGCGCATCGT CCTGCCCAAC
AAGGGCCGGC ACCTGTTGCC GGGCATGTTT GCCACGGTTC GCTTCGACAG CGGCGAGCAG
CAGGACGTAC TGACCATCCC GTTGGAAGCC GTCATCCGTA CCGGTCAGCG CAGCATTGTC
ATGGTCGATG GAGGCCAGGC CGGCTTTGTG GCCACCGAGA TCAAGACCGG GCGCGAGGCC
GGTGGAATGG TCGAGGTCCT GACTGGTCTC AAGGCTGGCC AGAAGGTCGT TACGTCCGGC
CAGTTCCTGA TCGATTCGGA AGCCAGCCTG CGTGGAACCA CCGAGCGTAT GGCGGTACCG
GCCGCGGCAT CTGCGCCGGC AGCGGCCAAC GCCGAACACG AAGGCGTCGG TCGCATCGAG
ACCGTCACGG GTGAAGGCCT GACGATCTCG CATGGTCCGA TTCCCTCGAT CCAGTGGGGG
GCCATGACAA TGGAGTTTGC GGCACCTCCC ACAGGGTTGC CCAAGGGTTT TAAGCCCGGC
GATCGCGTCC GCTTCCGCTT CCATCTGAAC GCCGAGGGCA TGGCGATTCT GTCTTCGGTC
GAGCCCGCCG CTGGCACGGG GAGCAAACCA TGA
|
|---|
| Protein sequence | MKKQIIATAA GLAILGAAMY GAYHFGVTQG ARSAQSSAPA SAASGLKAGD VDPKTGKKVL
YWHDPMVPGQ RFDKPGKSPF MDMQLVPVYA DGDSGASGIT VDSRVAQNLG IRTAEVKAGR
LSTVLEAPGN IVIDERSVQV IQARTNAFVQ HVAVRATLDP VRRGQALVTL YSPDWVAAQE
EYLAVLRQSA HGQADLASAA KARMLQTGMT PGQVSAVEAS GRLQPSVGIA SPIDGIVTEV
AVRDGMTVSP GMTLFRLADL SQVWVVAEVP EGQARTIAPG LAVKVTPTGA AEPLVGKVDT
VLPDVNPATR TIKVRIVLPN KGRHLLPGMF ATVRFDSGEQ QDVLTIPLEA VIRTGQRSIV
MVDGGQAGFV ATEIKTGREA GGMVEVLTGL KAGQKVVTSG QFLIDSEASL RGTTERMAVP
AAASAPAAAN AEHEGVGRIE TVTGEGLTIS HGPIPSIQWG AMTMEFAAPP TGLPKGFKPG
DRVRFRFHLN AEGMAILSSV EPAAGTGSKP
|
|---|
| |