Gene Rpic_1780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1780 
Symbol 
ID6288906 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1877879 
End bp1878565 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content63% 
IMG OID642625344 
Producttwo component heavy metal response transcriptional regulator, winged helix family 
Protein accessionYP_001899350 
Protein GI187928863 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR01387] heavy metal response regulator 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.817023 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.826624 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCTGT TAGTCGTCGA GGACGAACCC AAGACCGGAG AGTACCTGCA GCAAGGCCTG 
ACTGAAGCCG GCTTCGTGGT AGATCTGGCC TGCAACGGCA CTGACGGCCG GCATCTGGCT
ATGACCGGTG AGTACGACTT ACTGGTGCTG GATGTGATGT TGCCGGACGT CGATGGTTGG
CAGATCGTCC AATCGTTGCG AGCCTCGGAA CAAGCAGTGC CGGTGCTGTT CCTGACCGCG
CGCGACAGCG TGGCAGACCG CGTCAAAGGA CTCGAACTGG GTGCTGACGA CTACCTGGTG
AAGCCGTTCG CGTTTGCCGA GCTGCTGGCG CGGGTTCGCA CGCTGCTGCG CCGCGGAAAC
AGCGCGGTCA CTGCCGACCG CATCCAGGTG GCCGATCTGG TGCTGGATCT TGCCCGCCGC
CGCGCGTCGC GCGGTGGCCA GAAAATCCCG CTGACGAGCA AGGAGTTCTC GCTGCTCGAG
CTGCTGGTTC GGCGCCGTGG CGAAGTCCTG CCGCGCTCGC TGATCGCCTC TCAGGTCTGG
GACATGAACT TCGACAGCGA CACCAACGTG ATCGACGTCG CCATCCGCCG CCTGCGCGCA
AAGATCGATG ATCACTTCGA GCCGAAGCTG ATCCAAACGG TGCGCGGCAT GGGTTATGTG
CTCGAAGCAC CCGAGGAAGT GGCTTGA
 
Protein sequence
MKLLVVEDEP KTGEYLQQGL TEAGFVVDLA CNGTDGRHLA MTGEYDLLVL DVMLPDVDGW 
QIVQSLRASE QAVPVLFLTA RDSVADRVKG LELGADDYLV KPFAFAELLA RVRTLLRRGN
SAVTADRIQV ADLVLDLARR RASRGGQKIP LTSKEFSLLE LLVRRRGEVL PRSLIASQVW
DMNFDSDTNV IDVAIRRLRA KIDDHFEPKL IQTVRGMGYV LEAPEEVA