| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1665 |
|---|
| Symbol | |
|---|
| ID | 6288286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 1750240 |
|---|
| End bp | 1751688 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642625229 |
|---|
| Product | Carbohydrate-selective porin OprB |
|---|
| Protein accession | YP_001899235 |
|---|
| Protein GI | 187928748 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3659] Carbohydrate-selective porin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTTTT TCTCGATGCT GCAGTACGCT TGGGTTGCAG TGCGTCCGCT CGTTCTGGTG
CGCGCTGCTG CTCTGCGTCC CCTCCGTCGT CCGGCCTTGC TGGCTGCGAT GGCTTTGTTC
TCTGCTTTCA CGCATGCTGC CCAAGCGCAA GAAGCTCCGG CTTCTGCTCC GGCTGCAGAT
GCGCTGCCTG CCGGTGGTGA GTTGGGCGAC CGCTTCGGCT TCCATGGCCA ATCGACGTGG
GTCTGGCAAG CCAAGCCCGC CTTCAAGTCG CCGTACAGCG GCGACAACAG CCTGACGGCG
GGCCGCGCCA CGAGTTATTC CTTCAGCACG ACGCTGGACC TGGGCATGCG GCTGTGGAAG
GGCGCGGAAT TCCACTTCAA CCCGGAAGTG GTGATGGGCA AGGCGTTCTC CGATCTGCAT
GGCCTGGGTG GCCCCACCAA CGGCGAGTTG GCCAAGGTCA CGGGCACTGA CCCGACGCTG
TACCGCGCCC GCGTTTTCAT GCGTCAGACC TGGGGCCTGG GCGGTGACAC AGAAAAGGTC
GACGCCGACT TCAACCAGTT CGCTGACGTG GTCGACAAGC GTCGCGTGGT GCTGACCGCG
GGCAATCTGC CGGTGCTCGA TGTCTTTGAT GCCGTGGAGT ACGCGCACGA CCCGCGCACG
CAGTTCCTGA ACTGGTCGTT CATGACGCAC CCGTCGTTCG ACTATGCGGC CGATGCGCGC
GGCTACAGCT GGGGCGTTGC GCTGGAGTAC ATCGACAGCG AGCTGGGCTG GGCCGTCCGC
GCGGGCCGAT TCCTGCAACC GCTTGAGTCC AACGGCTTGC CGCTCGACAC GCGTTTTCTG
AAGCACTACG GCGACATGCT GGAGCTTGAA AAGCGCTACA CGCTGTTCGG CCAGGAGGGC
AAGGTGCGCT TGCTGGGCTG GCGCAACTTC GCGCGCATGG GCCGCTTTGA TGATGCGATT
GCGCTCGGGC AGGCCACCGG TGCCGCGCCA GACCTGAGCC AGGTGCGGCG CGAGCACGCC
AAGGTGGGCG TCGGCCTGTC GTTCGAGCAG AAAGTGGGCG AAAACCTGGG CCTGTTCACC
CGCCTGAACT GGTCGGATGA CAAGACCGAG ACCTATGCTT TTACCGAGGT GGGCCGCAAC
GTGTCGTTCG GCGGTCTGCT CAAGGGCACG TCCTGGGGGC GGCCGAATGA TGTGTTGGGG
GCGGCCTTTT CGCTCAACAT GCTGGGCCCG GATCATCGTG CCTATCTGGC GGCGGGCGGC
AGCGGCGCCT TCCTGGGTGA CGGCGCACTG AACTATGGCC ACGAGCGCAT ACTCGAAGTG
TTCTACAGCT TTCAACCGGT CAAGGGCATC ACGCTCAGCC CCGATTTTCA GTTGATCCAG
AACCCCGGTT ACAACCGGGA CCGCGGGCCT GCCAAGTTCT TTGGCATTCG TGCCCACGCG
GAGTTCTAA
|
|---|
| Protein sequence | MLFFSMLQYA WVAVRPLVLV RAAALRPLRR PALLAAMALF SAFTHAAQAQ EAPASAPAAD
ALPAGGELGD RFGFHGQSTW VWQAKPAFKS PYSGDNSLTA GRATSYSFST TLDLGMRLWK
GAEFHFNPEV VMGKAFSDLH GLGGPTNGEL AKVTGTDPTL YRARVFMRQT WGLGGDTEKV
DADFNQFADV VDKRRVVLTA GNLPVLDVFD AVEYAHDPRT QFLNWSFMTH PSFDYAADAR
GYSWGVALEY IDSELGWAVR AGRFLQPLES NGLPLDTRFL KHYGDMLELE KRYTLFGQEG
KVRLLGWRNF ARMGRFDDAI ALGQATGAAP DLSQVRREHA KVGVGLSFEQ KVGENLGLFT
RLNWSDDKTE TYAFTEVGRN VSFGGLLKGT SWGRPNDVLG AAFSLNMLGP DHRAYLAAGG
SGAFLGDGAL NYGHERILEV FYSFQPVKGI TLSPDFQLIQ NPGYNRDRGP AKFFGIRAHA
EF
|
|---|
| |