Gene Rpic_1527 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1527 
Symbol 
ID6289724 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1619830 
End bp1620711 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content62% 
IMG OID642625092 
ProductConjugal transfer protein TrbG/VirB9/CagX 
Protein accessionYP_001899098 
Protein GI187928611 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02775] P-type conjugative transfer protein TrbG
[TIGR02781] P-type conjugative transfer protein VirB9 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATGT CCCTATTGCG CACAACTTCC TCGGCGCTCG CATGCGCTTG TCTCGCGCTG 
GCTGTTGTCG GAGGCGCGTG GGCTGCTGCC GAGCGCCCCG CGAAGCGCGC CGAACCTGTT
ATCCCCCCGC TGAACTTGGG ATCAATGGCG GATGCCATGA ACCCCATGAA TCCGTTCAAC
GGTGGAGCGG AACCGCTGGC TATGCCGGGC GATTCCCGCC TCGTCGTCTT TACGTACAGC
AAGGATCAGA TTTATCGCGT CCTGACCGCG CCACTGAAGG GAACCACCAT TGAGTTCCCG
GACGATGAGC AGATCGTGTC GGAGCCGGCG TGGGGTGACA GCGTGCGCTG GGAATCGTCA
ACGGACAACG GCAATCATCT CTATCTCAAG CCGCACGCTG CCGGTCTGGT CAACACCCTG
TCGGTGACCA CAAACAAGCG CTCCTACGAG TTCACGCTGG TGTCGTCCCC CCTGGGCGGG
ATCTTCTACC AGAAGGTTCG CTTCCGCATC CCTGAGACCG TGATGGCCAA GATCAAGGCG
CGGGCAGATG GCGAGGCACG CGAGCAGGGA GAGCGTCCGG CGAACACCGT CGGCGTTTCG
CCGGACAAGC TCAACTTCGA CTATTCGACG TCGGGAAGCG CGGACTTCAA GCCCGACGCT
GTCTTTGATG ACGGCAAGCT CATCTGGATG CGCATGCCCG CGACTGCCAG CGAGTGGCCC
GTCGCGCTGG TGAAGGACGG AAGTGATTTC GTCGTAGCGA ACTTCATTCG CCGAGGCGAC
TACCTCGTGC TGCAGCGCCT GGCAGAGACC GTGGCGCTTC GGTCGGGTAG CACGGAGGTG
ATCGTGCGCC GCGGCCGCGG TCGCTTCTTG GGTCTCTTCT AA
 
Protein sequence
MTMSLLRTTS SALACACLAL AVVGGAWAAA ERPAKRAEPV IPPLNLGSMA DAMNPMNPFN 
GGAEPLAMPG DSRLVVFTYS KDQIYRVLTA PLKGTTIEFP DDEQIVSEPA WGDSVRWESS
TDNGNHLYLK PHAAGLVNTL SVTTNKRSYE FTLVSSPLGG IFYQKVRFRI PETVMAKIKA
RADGEAREQG ERPANTVGVS PDKLNFDYST SGSADFKPDA VFDDGKLIWM RMPATASEWP
VALVKDGSDF VVANFIRRGD YLVLQRLAET VALRSGSTEV IVRRGRGRFL GLF