| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1475 |
|---|
| Symbol | |
|---|
| ID | 6287529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 1566489 |
|---|
| End bp | 1567382 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642625040 |
|---|
| Product | extracellular solute-binding protein family 3 |
|---|
| Protein accession | YP_001899046 |
|---|
| Protein GI | 187928559 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.027912 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000000119497 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACACGA GACACACACT CGCTTCCACG CTTGTCGTGG CGGGTCTAAC GGTGGCGGCG
CAGGGCATCC ACGCCCAGAC GCTGGAAAAG GTCGCTGCAG CAGGCAAGAT CACGGTTGGT
TACCGTGAAG CGGCGGTTCC GTTCAGCTAC TTGCTGGCCC CGAACAAGGC GGTCGGATTT
TCCGTCGACC TGACGCAAGC CATCGTCGAC GATGTGCGCG CCCGGCTGAA GAAGCCGTCT
CTGCAGGTCG ACGCGATTCC GGTGACCGGC ACGAATCGGA TCCCGCTGCT GGTGAACGGC
ACCTACGACC TCGAATGCGG ATCGACCACC AACACCAGCG CGCGCGGCAA GGACGTGGCC
TTCTCGATCA ATTTCTTCTA CGCGGGAACG CGCCTCTTGA CCAAGCGCGA TTCGGGCATC
AAAAACTACC CGGACCTGGC CGGCAAGACC GTCGCGAGCA CGGCAGGCAG CACGAACGAA
AAGGTGCTCA AGAAGTTTGC CGTAGAACAC AACATCGACG TCCAGATCAT TTCCGGCAAG
GACTACGCAG ACGCGTTGAA GCTCGTCGAA ACCGGCCGAG CGACGGCATT GGCGCTCGAT
GACGTGCTGC TGTACGGCCT GCGTGCCAAT TCTGCAAATC CCGCTGCGCT GGAAGTCGTG
GCGGAAACCC TGCAGGTCGA GCCGTACGCC TGCATGGTTC GCAAGGACGA CCCCGCCTTC
AAGCGGCTCG TGGATGCGAC CATCACACGG CTCATGAAAT CCGGCGAATT CACCGCGCTG
TACAAGAAAT GGTTCGAGTC GCCCATCCCG CCGGCCGGTG CAAACCTCGA CATGCCGATG
AGCGATGCAC TGCGCGCCAA CCTGAAAAAG CGTAGCGATA AGCCGGCGCA GTGA
|
|---|
| Protein sequence | MNTRHTLAST LVVAGLTVAA QGIHAQTLEK VAAAGKITVG YREAAVPFSY LLAPNKAVGF
SVDLTQAIVD DVRARLKKPS LQVDAIPVTG TNRIPLLVNG TYDLECGSTT NTSARGKDVA
FSINFFYAGT RLLTKRDSGI KNYPDLAGKT VASTAGSTNE KVLKKFAVEH NIDVQIISGK
DYADALKLVE TGRATALALD DVLLYGLRAN SANPAALEVV AETLQVEPYA CMVRKDDPAF
KRLVDATITR LMKSGEFTAL YKKWFESPIP PAGANLDMPM SDALRANLKK RSDKPAQ
|
|---|
| |