| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1468 |
|---|
| Symbol | |
|---|
| ID | 6287870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 1560292 |
|---|
| End bp | 1561332 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642625033 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_001899039 |
|---|
| Protein GI | 187928552 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000000302605 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACA TCACAAAGAC GCGTCTGTCC GTGCTTGCCG GCGCATTCGC CATTGCATTC
GGCGCGCACG CTGCGGAAAT CACCGTTGTG AACTTCGGCG GCGCCAATGG TGACGCGCAG
AAGGCCGCCT TCAACAAGCC GTTCGAGGCG CAGACCGGTA ACAAGGTCAC CGTGGTCGAG
TACAACGGCG AGCAGGCCAA GATCAAGGCC ATGGTGGAAG CCAAGCACGT CAACTGGGAC
GTAGTGGAAG TCGAATCGGG CGACATCGGC CGCGGGTGTG ACGAAGGCCT GTTCGAGAAG
CTCGACTGGA GCAAGATCGC CAAGAAGAGC GATCTGATCC CAGAGTCGCC GAGCACTTGC
GGCGTGGGCT TCTTCGTGTG GTCGACCGCG ATGGCGTACA ACGCCGACAA GCTCAAGACT
GCCCCGACCG GCTGGGCCGA TTTCTGGGAC GTGAAGAAAT TCCCGGGCAA GCGCGGCATG
CGCAAGGGTG CGCGCGGCAA CCTGGAATTC GCGTTGATGG CCGACGGCGT GCCGGTCAAG
GACGTCTACA AGGTGCTCGC CACCAAGGAC GGCCAGAACC GCGCGTTCAA GAAGCTCGAT
CAGCTCAAGC CGAACATCCA GTGGTGGGAA GCCGGCGCAC AGCCGCCGCA GTTCCTGGTG
GCGGGTGACG TGGTGATGTC CACCGCGTTC AACGGCCGCA TCGACGCCGC GCAGCGCGAA
GGCAAGAACC TGAAGGTGGT CTGGAACGGC AGCATCTACG ACCTGGACTA CTGGGCCATC
CCCAAGGGCA CGCCCAACAA GGCGCTGGCC GAGCAGTACA TCGCCTACAC GCTGTCGCAG
AAGCCGCAGC AGGAATACGC CAAGCACATC GCGTACGGCC CGGCCAACGT GGCGGCGATC
AAGGCGCTCG ACGCCAAGAC GCAGGCCAAC ATGCCGAACT CCCCGGAGAA CGCCAAGAAC
GCCGTGCTGC AGAACCTGCA GTTCTGGACC GACCACGGCG ACGAGCTGGA ACAGCGCTTC
GCCTCGTGGG CGTCGAAGTA A
|
|---|
| Protein sequence | MKHITKTRLS VLAGAFAIAF GAHAAEITVV NFGGANGDAQ KAAFNKPFEA QTGNKVTVVE
YNGEQAKIKA MVEAKHVNWD VVEVESGDIG RGCDEGLFEK LDWSKIAKKS DLIPESPSTC
GVGFFVWSTA MAYNADKLKT APTGWADFWD VKKFPGKRGM RKGARGNLEF ALMADGVPVK
DVYKVLATKD GQNRAFKKLD QLKPNIQWWE AGAQPPQFLV AGDVVMSTAF NGRIDAAQRE
GKNLKVVWNG SIYDLDYWAI PKGTPNKALA EQYIAYTLSQ KPQQEYAKHI AYGPANVAAI
KALDAKTQAN MPNSPENAKN AVLQNLQFWT DHGDELEQRF ASWASK
|
|---|
| |