Gene Rpic_1454 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1454 
Symbol 
ID6286697 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1544966 
End bp1546222 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content60% 
IMG OID642625021 
Productputative Leu/Ile/Val-binding precursor signal peptide protein 
Protein accessionYP_001899027 
Protein GI187928540 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.689269 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00017453 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGAAGT TCCGTCCGTT GGTTGTGGCT GTTGCATGTG TTGCGGCAAT CGGTGGGGCA 
GCTCTGCCCA CTGCAGCGTC CGCCGCCGAA ACCGTGAAGA TCGCCTGGAT CGATCCGTTG
TCCGGCCTGA TGGGCGCGCT GGGTCAGAAC CAGTTGCGCA GCTGGCAGTA CATTGCCGAT
CTCGCCACGC AGAAGAACTG GGCCGGCGAC GGCACGAAGT TCGAAGTGGT GGGCTTCGAC
AACAAGCTCT CGCCGCAGGA AAGCCTGACG GCGCTCAAGC AGGTGGCTGA TCAGGGCATC
CACTACATCG TGCAGGGCAA CGGCTCGAGC GTGGGCATGG CGCTGGAAGA CGCCGTGGCC
AAGTACAACG AGCGTAATCC GGGTAAGGAA ATCGTCTACC TGAACTACGC TGCGGTGGAT
CCGGACATGA CGAACAGCAA GTGCAATTAC TGGCACTTCC GCCTGGACGC CAACTCCGAC
ATGAAGATGG AAGCGCTGAC CAGCTTCCTG GCGAAAGATC CGAAGGTCAA GAAGGTCTAC
CTGATCAACC AGAACTATTC GTTCGGCCAT CAGGTCGCGC GTGCGGCCAA GGAATACCTC
AAGCGCAAGC GTCCAGACAT CGAGATCGTG GGTGAAGACC TGCACCCGCT GGCGCAGGTG
AAGGACTTCT CGCCGTACGT CTCGAAGATC AAGTCGTCGG GTGCCGACAC CGTCATCACC
GGCAACTGGG GCAGCGACCT GGCACTGCTC ATCAAAGCCG GCAAGGATGC AGGCCTGAAC
GCGAACTTCT ATACGTACTA CGCCTCGACC ACGGGCGTTC CGACAGCGAT GGGCTCCGCA
GGGGCAGATC ATGTGAAATA CGTGGGCTAC TGGAACGTCA ACAACGACGG CTACAAGGGC
GCCGATATCG TCGAGGGCTA CAAGAAGAAG TACAACGACG ATTACTACCT CATGGCGTCG
TACACCGGCA TCGCCATGCT GGCCAAGGCC ATCAAGCAGA CGAAGTCGGC CGAGCCTGCC
AAGGTGGCCA AGGCCTTCGA AGGCATGAAG GTCGACAGCC TGAACGGCAC TTTCGAGATG
CGCGCGTCTG ACCACCAGGG CCAGCAGCCG CTCTACATCG CCACCTGGGA AAAAACCAAC
GGCAAGAACG TCAAGTTCGA CCAGGAAAAC ACCGGCTACG GCTGGAAGAC CGATGCGGTG
CTCGACCAGT ACGTCGCGTC GCAGCCGACT TCCTGCCAGA TGAAGCGTCC ACAGTAA
 
Protein sequence
MTKFRPLVVA VACVAAIGGA ALPTAASAAE TVKIAWIDPL SGLMGALGQN QLRSWQYIAD 
LATQKNWAGD GTKFEVVGFD NKLSPQESLT ALKQVADQGI HYIVQGNGSS VGMALEDAVA
KYNERNPGKE IVYLNYAAVD PDMTNSKCNY WHFRLDANSD MKMEALTSFL AKDPKVKKVY
LINQNYSFGH QVARAAKEYL KRKRPDIEIV GEDLHPLAQV KDFSPYVSKI KSSGADTVIT
GNWGSDLALL IKAGKDAGLN ANFYTYYAST TGVPTAMGSA GADHVKYVGY WNVNNDGYKG
ADIVEGYKKK YNDDYYLMAS YTGIAMLAKA IKQTKSAEPA KVAKAFEGMK VDSLNGTFEM
RASDHQGQQP LYIATWEKTN GKNVKFDQEN TGYGWKTDAV LDQYVASQPT SCQMKRPQ