Gene Rpic_1453 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1453 
Symbol 
ID6286616 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1543892 
End bp1544884 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content62% 
IMG OID642625020 
Productinner-membrane translocator 
Protein accessionYP_001899026 
Protein GI187928539 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0559] Branched-chain amino acid ABC-type transport system, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0626411 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.000392486 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGCTCGC CCGTGCTCCG CCGAATCTGC TGGAAGGGCT GCAGCGTGGA ATTTCTAGTC 
ATCAATCTCT TGAACGGCAT CAGCTACGGG CTGCTGCTGT TCATGTTGTC TTCGGGCCTG
ACGCTGATCT TCAGCATGAT GGGCGTGCTC AATTTTGCAC ACGCCAGCTT CTACATGCTG
GGCGCGTATT TCGCCTATGT CGTCAGCGGC TATCTGGGCT TCTGGACCGC GTTGATCGTG
GCGCCGCTGC TGGTGGGCGC GCTGGGCGCA GTTGTCGAGC GCTTCGGCCT GCGCACGGTG
CACCGCTATG GCCACGTGGC CGAACTGCTG TTTACCTTCG GACTGGCCTA TCTGATTGAA
GAAGGCGTGA AGCTGGTGTG GGGCCTGCCC GCCGTGCCGT ACCGCGTGCC GGACGCGCTG
GATGGCCCGT TGTTCACGCT GTTCACGTCG TCGTTTCCCA AGTACCGCGC CTTCATGATG
CTGGTGTCGC TGCTGATGCT GGTTGGCATT TTTCTGCTGC TCACGCGCAC GCGTATCGGG
CTCGTCATTC AAGCTGCGCT TACGCATCCG GACATGGTCG AAGCGCTGGG TCACAACGTA
CCGCGCGTGT TCATGCTGGT GTTCGGCGGC GGCTGCGCGC TGGCCGGGTT GGCGGGCGTG
ATTGGCGGCA ACGCGTTCGT GACCGAGCCA TCGATGGCGG CAGCGGTCGG CTCCATCGTC
TTCGTGGTGG CGGTCGTGGG CGGCATGGGG TCTCTTGTGG GCGCGTTCGT TGCGTCGCTG
CTGATCGGTT GCATCCAGAC CTTTGCCGTC ACGCTTGATA TTTCGGTGAC CAGCGTGCTC
GGGAAGATCG GTGTCACGCT CAACCCCGAC GTGCCGCTCA TCTCGGTCTG GAACCTGACG
ATTGCGCAAG TCGCACCGGT GCTGCCGTAT CTGCTGCTGG TGCTGATGCT GATCTTCCGC
CCGCGTGGGC TGATGGGTAC GCGGGAGAGC TAA
 
Protein sequence
MRSPVLRRIC WKGCSVEFLV INLLNGISYG LLLFMLSSGL TLIFSMMGVL NFAHASFYML 
GAYFAYVVSG YLGFWTALIV APLLVGALGA VVERFGLRTV HRYGHVAELL FTFGLAYLIE
EGVKLVWGLP AVPYRVPDAL DGPLFTLFTS SFPKYRAFMM LVSLLMLVGI FLLLTRTRIG
LVIQAALTHP DMVEALGHNV PRVFMLVFGG GCALAGLAGV IGGNAFVTEP SMAAAVGSIV
FVVAVVGGMG SLVGAFVASL LIGCIQTFAV TLDISVTSVL GKIGVTLNPD VPLISVWNLT
IAQVAPVLPY LLLVLMLIFR PRGLMGTRES