| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1450 |
|---|
| Symbol | |
|---|
| ID | 6286613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 1541041 |
|---|
| End bp | 1541760 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642625017 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001899023 |
|---|
| Protein GI | 187928536 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0957848 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.000807382 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACGA ATACTCCGAT GTTGGAGGTG CGCGACCTGC ACGCGTACTA CGGCAAGAGC
CACATCCTGC ACGGCGTCGA CATGCATGTG GGCGAGGGCG AGATCGTTGC GCTGCTCGGC
CGAAACGGCG TGGGGCGTTC GACCCTGGCC AAGTCCATCA TGGGCATGGT GCGGCACGAA
GGCGAAATCC TGCTGCGCGG CAAGAACGTG AGTGGCCTGC GAACCTTCGA AGTCGCGCAC
AAAGGCATCG GCTATGTGCC CGAGAACCGG GATATTTTCC CCACGCTGAC GGTGCGGCAG
AACCTGTTGC TTGGCGAGAA ACGCAATCCC AGTCAGCCCA AGCCGCGCTG GCAGGTCGAA
GACATGTACC AGATGTTCCC GCGCCTGAAG GAGCGCGAGA ACACCGCCGC CGGTGTGCTG
TCGGGTGGCG AGCAGCAGAT GCTGACGCTG TGCCGCACGC TGATGGGCGA TCCCGACTTC
ATCATCATCG ACGAGCCGAC CGAGGGCCTT GCGCCGCTGG TCGTGACGCT CGTGGGCGAG
TATCTGAAGA CGCTCAAGGA GCGGGGGATC TCCGTGCTGC TGGTGGAGCA GAAACTCGCC
ATTGCCCTCG ACATTTCACA GCGGGTGTAT GTGATGGGTC ACGGGCAGAT CGTGTTTGAA
GGAACGCCCC AGCAGTTGAA GGCCGATGCG AAAGTCCGGC AGGAGTGGCT GGAGGTGTAA
|
|---|
| Protein sequence | MATNTPMLEV RDLHAYYGKS HILHGVDMHV GEGEIVALLG RNGVGRSTLA KSIMGMVRHE
GEILLRGKNV SGLRTFEVAH KGIGYVPENR DIFPTLTVRQ NLLLGEKRNP SQPKPRWQVE
DMYQMFPRLK ERENTAAGVL SGGEQQMLTL CRTLMGDPDF IIIDEPTEGL APLVVTLVGE
YLKTLKERGI SVLLVEQKLA IALDISQRVY VMGHGQIVFE GTPQQLKADA KVRQEWLEV
|
|---|
| |