| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1444 |
|---|
| Symbol | |
|---|
| ID | 6286733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 1531295 |
|---|
| End bp | 1533163 |
|---|
| Gene Length | 1869 bp |
|---|
| Protein Length | 622 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642625011 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_001899017 |
|---|
| Protein GI | 187928530 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0386828 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCGA AACTGCTATC CCGCCGCGAC CTCAGCTTCC TGCTCTACGA ATGGCTCAAC
GTTGAGTCAC TCACAAGCAT TCCCCGTTAC GCCGACCACT CCCGCGAAAC CTTCGACGCC
GCGCTCGACA CCTGCGAGCG CATCGCAACG GATCTGTTTG CTCCGCATAA CAAGAAAAAC
GACCAAGAAG AACCGCACTT CGACGGCACC AAGGTCCACA TCATTCCCGA GGTCAAGGCA
GCGCTGGACG CCTTCAACAA AGCGGGCCTG ATGGCTGCCG GGCAAGACTT TGAACGTGGC
GGCATGCAAC TGCCCACGGT GGTCGAAAAA GCCGGCTTCG GTTTCTTCAA GGCTGCCAAC
GTCGGCACCA GTTCGTATCC ATTCCTCACC ATCGGCAACG CGAATCTGCT GCTCGCGCAT
GGCACGCCCG CGCAGATCGA AACGTTTGTA CAGCCCGAGA TGGAAGGCCG CTTCTACGGC
ACGATGTGCC TGTCGGAGCC GCAGGCCGGC TCGTCGCTCT CGGACATCGT CACGCGGGCC
GAGTACGAGG GCGAATCGCC GCTCGGCGCG CAGTACCGTT TAACCGGCAA CAAGATGTGG
ATCTCCGCCG GTGAACATGA GCTGTCGGAA AACATCGTCC ACCTTGTGCT GGCGAAGATC
CCCGGCCCGG ACGGCAAGCT GATTCCGGGC GTGAAGGGTA TCTCGCTGTT CATCGTGCCG
AAGTTCCTCG TCAACGCCGA TGGCTCGCTC GGCGAGCGCA ATGACGTGGT GCTCGCCGGC
CTGAACCACA AGATGGGCTA TCGCGGCACG ACCAACTGCC TGCTAAATTT TGGTGAGGGC
ACGCAGTTCC GTCCGAAGGG CGCAGATGGC CAGCCGCGCC CTGGCGCCAT CGGTTACCTC
GTCGGCGAGC CGCACAAGGG TCTCGCATGC ATGTTCCACA TGATGAACGA GGCGCGCATC
GGCGTCGGCA TGGGCGCAAC GATGCTTGGC TACACGGGTT ATCTGCACGC GGTGGACTAC
GCGCGCAATC GCCCGCAGGG CCGCCCGGTC GGGCCATCGG GCAAGGATGC AGCATCTCCG
CAGATCCGTA TCGTCGATCA CGCCGACGTG CGTCGCATGC TGCTGGCGCA GAAGGCGTAT
GTGGAAGGCG CGCTCGGCTT GAACCTGTAT TGCGCCAAGC TCGTCGATGA AGAACGCGGG
GAAACCGACG CAGCCAAACG CGCCAAGCTC GGTCTGCTGC TCGACATCCT CACGCCGATT
GCCAAGAGTT GGCCGTCGCA GTGGTGCCTG GAGGCCAACA GCCTGGCGAT CCAGGTGCAT
GGCGGTTACG GCTACACGCG CGAATACAAC GTCGAACAGT TCTACCGCGA CAACCGCCTG
AACCCGATTC ACGAAGGTAC GCACGGCATC CAGGGCCTGG ACCTGCTGGG CCGCAAGGTC
GTGATGCAGG ACGGCGCTGC CTTCGCCGCG CTCGGTGAGC GCGTGCAGGC CACCGTCGGC
CGTGCGTTGG AAACTGACGA TGAAACGCTG GTCGGCTACG GCCGTGCGCT CGGCATGGCG
ACGCAGAAAC TGGCCAAGGT CACGCAGACG CTGTGGGCCG CCGGCGACCC GCGCGTGACG
CTGGCGAATG CCTCGGTCTA TCTGGAAGCG TTCGGCCACG TCGTCGTCGC GTGGATCTGG
CTGGAGCAGG CGCTGGCCGC CGCCAAGGCA TTGCCGAACG CCCAAGGCGA AGACGCTGAT
TTCTACCGCG GCAAGCTGCA GGCCGCGCGC TATTTCTTCC AGTGGGAACT GCCAAAGATC
GACCCGCAGA TCGTGCTGCT GGGCTCGCTC GACACGACCA CGCTGGACAT GCAGGACGCC
TGGTTCTGA
|
|---|
| Protein sequence | MSSKLLSRRD LSFLLYEWLN VESLTSIPRY ADHSRETFDA ALDTCERIAT DLFAPHNKKN
DQEEPHFDGT KVHIIPEVKA ALDAFNKAGL MAAGQDFERG GMQLPTVVEK AGFGFFKAAN
VGTSSYPFLT IGNANLLLAH GTPAQIETFV QPEMEGRFYG TMCLSEPQAG SSLSDIVTRA
EYEGESPLGA QYRLTGNKMW ISAGEHELSE NIVHLVLAKI PGPDGKLIPG VKGISLFIVP
KFLVNADGSL GERNDVVLAG LNHKMGYRGT TNCLLNFGEG TQFRPKGADG QPRPGAIGYL
VGEPHKGLAC MFHMMNEARI GVGMGATMLG YTGYLHAVDY ARNRPQGRPV GPSGKDAASP
QIRIVDHADV RRMLLAQKAY VEGALGLNLY CAKLVDEERG ETDAAKRAKL GLLLDILTPI
AKSWPSQWCL EANSLAIQVH GGYGYTREYN VEQFYRDNRL NPIHEGTHGI QGLDLLGRKV
VMQDGAAFAA LGERVQATVG RALETDDETL VGYGRALGMA TQKLAKVTQT LWAAGDPRVT
LANASVYLEA FGHVVVAWIW LEQALAAAKA LPNAQGEDAD FYRGKLQAAR YFFQWELPKI
DPQIVLLGSL DTTTLDMQDA WF
|
|---|
| |