Gene Rpic_1368 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1368 
Symbol 
ID6286960 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1466055 
End bp1467374 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content65% 
IMG OID642624936 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_001898942 
Protein GI187928455 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00895] benzoate transport 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00531865 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.175653 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCAGA TTGACCTGCA CGCAGTGGCC GACCACGCCC GGTTCGGCCG CTTCCATGCC 
ATCACACTGT TCTGGTGCGC GCTCATCATC ATCTTTGACG GCTACGACCT TGCCATCGCG
GGCATTGCAC TGCCGTCCAT CATGAAGGAC ATGGGCGTCA CGCCCACCAG CGCCGGCTTC
ATGGTCAGCG CGGCACTGTT CGGCATGATG TTCGGCGCGA TCTTTCTGGG CACGATTGCG
GATCGTATCG GCCGCCGCTG GGCGATTGCC GTGTGCATCG TGCTGTTCAG CGTCTTTACG
GCGGCAGCGG GTTTCTCCAC GGACCCGGTC ACCTTCAGCG TGACGCGTTT CCTGGCGGGC
CTCGGTATCG GCGGTGTGAT GCCGAACGTC GTGGCGCAGA TGACGGAGTA CTCGCCGCGC
CGGGCGCGCA GCACGCTCGT CACGCTCATG TTCAGCGGCT ATTCGGTGGG CGGCATGCTG
GCGGCGCTGC TGGGCAAGGG TCTGCTGGAA CACTACGGCT GGCAATCGGT GTTCATCGCG
GCTGTGCTGC CCGTGCTGCT GGTGCCGGCG ATCCTGCGGT GGATGCCGGA ATCGATGCCG
TTCCTGCTGC GCACCGGCAA GCTCGATGCG GTGCGTGACA TCGTGCGCCG GCTCAACCCA
AACGATGCGC CTCAGCCAGG CGACACCTTC ATCCTGCCCG AAGCCGATCG CGGCAACGAA
GCGCCGCTGG GCAGGCTGTT CCAGGACGGA CGCGGCTTCA GCACGGCGAT GTTCTGGATT
GCCTTCTTCA TGTGCCTGTT CATGGTTTAC GCGCTCAGCT CGTGGCTGAC CAAGCTGATG
GCGTCGGCGG GCTACAGCCT GGGTTCGGCG CTCACCTTTG TGCTGGTGCT GAACTTCGGG
GCCATGCTCG GCGCCATCGG CGGCGGCTGG CTGGCTGATC GCTTCAACAT CAAATACGTG
CTGATGGCCA TGTATGCGCT GGCGGCGGTG TCGATCGCAT TGCTCGGCAT CAAGACTTCA
ACCGAGGCGC TGTACGTGCT GGTGGCCGTG GCCGGCGGCT GCACCATCGG CACGCAGATC
GTGACGTACG CCTATGCCGG GCAGTTCTAT CCGATGAGCA TCCGCTCCAC GGGCATCGGC
TGGGCATCGG GCGTCGGGCG CAGCGGGGCC ATCCTCGCTC CCATCGTCAT CGGCATGCTG
GTGGGGATGG CGCTACCGCT GCACCACAAC TTCTTCGCCA TGGCTGTGCC GGCGGTGATT
GCGACGATTG CCGTGGCGTT CATCAACCAC CAGCGGTCGG CCTCGGTCAT CGCGCGCTGA
 
Protein sequence
MRQIDLHAVA DHARFGRFHA ITLFWCALII IFDGYDLAIA GIALPSIMKD MGVTPTSAGF 
MVSAALFGMM FGAIFLGTIA DRIGRRWAIA VCIVLFSVFT AAAGFSTDPV TFSVTRFLAG
LGIGGVMPNV VAQMTEYSPR RARSTLVTLM FSGYSVGGML AALLGKGLLE HYGWQSVFIA
AVLPVLLVPA ILRWMPESMP FLLRTGKLDA VRDIVRRLNP NDAPQPGDTF ILPEADRGNE
APLGRLFQDG RGFSTAMFWI AFFMCLFMVY ALSSWLTKLM ASAGYSLGSA LTFVLVLNFG
AMLGAIGGGW LADRFNIKYV LMAMYALAAV SIALLGIKTS TEALYVLVAV AGGCTIGTQI
VTYAYAGQFY PMSIRSTGIG WASGVGRSGA ILAPIVIGML VGMALPLHHN FFAMAVPAVI
ATIAVAFINH QRSASVIAR