| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1319 |
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| Symbol | |
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| ID | 6289176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 1413520 |
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| End bp | 1414215 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642624888 |
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| Product | protocatechuate 3,4-dioxygenase, alpha subunit |
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| Protein accession | YP_001898894 |
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| Protein GI | 187928407 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | [TIGR02423] protocatechuate 3,4-dioxygenase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00316133 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.770369 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACGA CCACACTGCG TGAATCGCTC GAACGTGCGC AGGCAACGGC CATGACGACA
ACGCCGCCGT TCGCGCATTT CAACGAGACC GCATCGCAGA CGGGCGGCCC GTACGTGCAC
ATCGGCCTCG CACCGCGCCA GGCCGGCTTC GACATTTACG ACAAGGAATT CGGCAGCGTC
CTGACCACGC CCGCCACGCG CGGCGAACGC ATCGCGTTGG AAGGCCGCGT CTACGATGGC
TCCGGCTCGC TCGTGCGCGA TGTGCTGATC GAGATCTGGC AAGCCAACGC GGACGGCAAA
TACGCCCATC CGGCCGATCG GCAAGACAAA CCTGTCGACC CGGCATTCCG CGGCTGGGGC
CGCGCCGGCG CCGATTTCGA TACGGGCGTC TATCGCTTCG ACACCATCAA GCCGGGCGCC
GTGGCCGGCC GCAGCGGGAC CACGCAGGCG CCGCACATCT GCATGATCCT GTTTGCGCGC
GGCATCAACC TTGGCCTGCA CACACGCGTG TACTTCAGCG ACGAGGCTGC AGCCAACGGC
ACGGATCCGG TGCTGAACGG CATCGAGTGG GAAGTGCGTC GCAAGACGCT GATTGCCCAG
CGCAGCGAGT GTAACGGCGA GGTGGTCTAC ACCTTCGACG TGCGCCTGCA AGACACGCCG
GATGGAGGCG CGGAGACGGT CTTCTTCGAT ATCTGA
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| Protein sequence | MTTTTLRESL ERAQATAMTT TPPFAHFNET ASQTGGPYVH IGLAPRQAGF DIYDKEFGSV
LTTPATRGER IALEGRVYDG SGSLVRDVLI EIWQANADGK YAHPADRQDK PVDPAFRGWG
RAGADFDTGV YRFDTIKPGA VAGRSGTTQA PHICMILFAR GINLGLHTRV YFSDEAAANG
TDPVLNGIEW EVRRKTLIAQ RSECNGEVVY TFDVRLQDTP DGGAETVFFD I
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