| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1301 |
|---|
| Symbol | smpB |
|---|
| ID | 6286957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 1398494 |
|---|
| End bp | 1398940 |
|---|
| Gene Length | 447 bp |
|---|
| Protein Length | 148 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642624871 |
|---|
| Product | SsrA-binding protein |
|---|
| Protein accession | YP_001898877 |
|---|
| Protein GI | 187928390 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0691] tmRNA-binding protein |
|---|
| TIGRFAM ID | [TIGR00086] SsrA-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.928696 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCG CCGACAACAA GAAGGCCTTT TTCGATTATT TCATCGAAGA GCGCTACGAG
GCAGGGATGG CTCTCGAGGG CTGGGAGGTG AAAGCCATCC GGGCCAACCG TGCGCAGATC
AAGGAAGGTT ACGTCGTCAT TCGTAACGCC GAGCTGTTCC TGATCGGGGC CCATATCAGC
CCGCTGCAAT CGGCCTCCAC GCATGTCCAT CCGGACCCCG TGCGCACCCG CAAACTGCTG
CTGCACGCCG AAGAGATCAA GAAGCTCATC GGCAAGGTCG AGCAGCGTGG CTACACGCTC
GTTCCGCTCA ACCTGCACTA CACGCGCGGC CGCGTGAAGT GCGAAATCGG CCTCGCCAAG
GGCAAGAAGC AGTTCGACAA GCGCGAAACC GAGAAGGACC GCGACTGGCA GCGCGAAAAA
GCCCGCCTCA TGCGCGAGAA GGCTTGA
|
|---|
| Protein sequence | MTIADNKKAF FDYFIEERYE AGMALEGWEV KAIRANRAQI KEGYVVIRNA ELFLIGAHIS
PLQSASTHVH PDPVRTRKLL LHAEEIKKLI GKVEQRGYTL VPLNLHYTRG RVKCEIGLAK
GKKQFDKRET EKDRDWQREK ARLMREKA
|
|---|
| |