| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1275 |
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| Symbol | |
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| ID | 6287070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 1367760 |
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| End bp | 1369784 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642624845 |
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| Product | RNA-binding S4 domain protein |
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| Protein accession | YP_001898851 |
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| Protein GI | 187928364 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.206781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTCGC CATCTGAGCG CCAGCCTTAC CGGTCTAGAT TCATGACTAC CGATTCCGAT
GATTTTCCGG GCGACGACGA CAAGCACCGC GCCAGCGACC CGACTCAGCG CGCCACCCGC
CCGGGCAAGC GCGCCACGCT CGGCGTGCGC CGCGACGACG AAGGCAATGC CGTACGCTCC
ACCACCGGCA AGCCGCTGCG CTCATCCGAC CTGAACCGCG AGCGCCAGCC GCTGCGCCCA
TCGCAGCGCC GGCCCAAACC GGAAGAAGGC GCCGGTAAGC CGCCGCGCCC CGCGCGCCCC
CCGCGCCGCG ACGACGACGG CCAGACGCGC GAAGCCAAGC CGCGCCGCAT GCAAGGCGAT
CGCCCGCCGC GACGCTTTGA TGATGAGCGC CCGCCGCGTC GATTCAACGA AGAGCAACGA
CCGCCCCGCC GCTCCGACGA CGAGCGTCCG CCGCGACGTT TCGAAGATCG CCCACCTCGC
CGGTTCGACG ACGAGCGTCC GCCGCGCAGG TTCGACAACG ACCGTCCCCC GAGACGCTTT
GACGATGAGC GCCCGCCGCG CCGGTTCAGC GACGACCAAC GGCCGCCTCG TCGTTTCGAT
GAGGAGCGCC CACGCCGCTA TGGCGACGAT CAACGCGCGC CGCGTCGTGA TGGCGACCAA
CGCCCTCCGC GACGCTTTGA CGAAGAGCGC CCGCCACGCC GGTTCAATGA CGAGCAGCGG
CCACCGCGCC GCTTCGACGA AGAGCGCCCC CCGCGCAAGT TCGGTGACGA TCAGCGCCCG
CCCCGTCGTT TCGATGACGA GCGCCCGCGC CGCTATGGCG ACGATCAACG CGCACCGCGT
CGTGATGGCG ACCAACGTCC GCCGCGCCGC CTTGACGACG AACGCCCCCC GCGCCGGTTC
AGCGACGACC AACGTCCGCC CCGTCGTTTC GATGACGAAC GCCCGCGCCG CTATGGCGAC
GATCAACGCG CGCCGCGTCG CGATGGCGAC CAGCGGCCTC CACGACGCTT TGACGATGAA
CGCCCGCCGC GCCGATTCGA CGACGAGCAA CGGCCGCCGC GGCGCTATGG CGATGACCGG
GCTCCGCGTC GCTTCGATGA CGAACGCCCT CCGCGTCGTT TTGACAACGA CCGACCACCG
CGTCGCTTCG ATGATCGTCC GGCACGTCCG CAACGGCCCG AGCGCGAGCG TGAGGAACGC
GCTCCGCGTC ACGCCGAGGA GCAGGCACCG CGCCCGGCGC AGCAGACCGA ATCGAGCGGA
CTGGTCCGTC TGTCCAAGCG CATGTCCGAA CTGGGGCTGT GCTCGCGCCG GGAGGCCGAT
GAATGGATTC CGCGCGGCTG GGTGCTGGTG GACGGCGAGC CCGTCACCGA ACTGGGTTCG
CGCGTCAAGC CGGATGCGAT CATCGAGATC CATCAAGCTG CGAGATCCGA GCAAGGCGAG
CGCGTCACCG TGCTGATGCA CAAGCCGGTC GGCTATGTGT CAGGCCAGGC GGAAGACGGC
TATCAGCCGG CGGTTTCGCT GTTCGTGCCG GAAAACCAGT GGGAAGCCGA CCCCACGCGC
AAGCGCTTCG CGCCGTGGCA GCGCAGGGCG TTGGCGCCGG CCGGTCGACT GGATATCGAC
TCCACCGGCT TACTGGTGTT GACGCAGGAC GGCCGTGTGG CGCGCCACCT GATCGGCGAG
GATTCGACGG TCGAGAAGGA ATACCTGGTG CGCGTGGTAT GGCATTCGCC GGACGGCGTG
GTCGAGCGCG ACATCTCCAA GGTCTTCCCG GAAGAGCTGA TGGAGAAGCT GCGCTTTGGC
CTGTCGCTCG ACGGCGAAGC ACTCAAGCCC GCGAAGGTGA GTTGGCAGAA CGAAGAGCAG
CTGCGCTTCG TGCTGCGCGA AGGCAAGAAG CGCCAGATCC GCCGCATGTG CGAACAGGTG
GGACTGGAGG TGGTGGGCCT CAAGCGCATC CGCATGGGCA GCATCGTGCT GGGCGACCTG
CCGGTCGGTC AGTGGCGCTT CCTGGGGCCG TTCGAGAAAT TCTGA
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| Protein sequence | MRSPSERQPY RSRFMTTDSD DFPGDDDKHR ASDPTQRATR PGKRATLGVR RDDEGNAVRS
TTGKPLRSSD LNRERQPLRP SQRRPKPEEG AGKPPRPARP PRRDDDGQTR EAKPRRMQGD
RPPRRFDDER PPRRFNEEQR PPRRSDDERP PRRFEDRPPR RFDDERPPRR FDNDRPPRRF
DDERPPRRFS DDQRPPRRFD EERPRRYGDD QRAPRRDGDQ RPPRRFDEER PPRRFNDEQR
PPRRFDEERP PRKFGDDQRP PRRFDDERPR RYGDDQRAPR RDGDQRPPRR LDDERPPRRF
SDDQRPPRRF DDERPRRYGD DQRAPRRDGD QRPPRRFDDE RPPRRFDDEQ RPPRRYGDDR
APRRFDDERP PRRFDNDRPP RRFDDRPARP QRPEREREER APRHAEEQAP RPAQQTESSG
LVRLSKRMSE LGLCSRREAD EWIPRGWVLV DGEPVTELGS RVKPDAIIEI HQAARSEQGE
RVTVLMHKPV GYVSGQAEDG YQPAVSLFVP ENQWEADPTR KRFAPWQRRA LAPAGRLDID
STGLLVLTQD GRVARHLIGE DSTVEKEYLV RVVWHSPDGV VERDISKVFP EELMEKLRFG
LSLDGEALKP AKVSWQNEEQ LRFVLREGKK RQIRRMCEQV GLEVVGLKRI RMGSIVLGDL
PVGQWRFLGP FEKF
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