| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1254 |
|---|
| Symbol | |
|---|
| ID | 6288493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 1344641 |
|---|
| End bp | 1345564 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642624824 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001898830 |
|---|
| Protein GI | 187928343 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.237541 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.589028 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAACT ACTTCATTAA ACGTGCGCTG GGCGTGATCC CGACACTGCT GATCGTGGCA
GTGCTGGTGT TCCTGTTCGT GCATCTGTTG CCCGGCGACC CGGCGCGTTT GGCCGCCGGC
CCCGAAGCGG ACGAGATGAC GGTCGATCTC GTCCGCAAGG ACCTGGGCCT GGACAAGCCG
ATGCACGAGC AGTTCGTGCG CTTCTTCGCC AACGCCGCAC GTGGTGAATT CGGCAACTCC
ATCCGCACCA AGCGCCCGGT GAGCGAAGAG ATTGGCGAAC GCTTCTGGCC GACGCTCAAT
CTGACGATCA CCAGCATGGT GTGGGCGGTG ATCTTCGGCA TGGTGATCGG CATCACATCC
GCCGTGTGGC GCAACAAGTG GCCTGACCGC CTGGGCATGA CGCTCGCCGT GTCGGGCATC
TCGTTCCCCG CGTTCGCACT GGGCATGCTG CTGATGGAAG TGTTCTCGGT GCAGCTTGGC
TGGCTGCCAG CCATCGGTGC GGACACCTGG AAGCACTACA TCCTGCCTTC GCTCACGCTG
GGCGCTGCAG TGGCTGCCGT GATGGCGCGC TTCACGCGTG CGTCGTTCGT GGAAGTGCTG
CAGGAAGATT TCGTGCGCAC CGCCCGTGCC AAGGGCGTGC GCGAGACTGT GGTGGTCATC
AAGCATTGCC TGCGCAACGC GATGATCCCG GTGGTCACGA TGATGGGCCT GCAGTTCGGT
TTTCTGCTGG GCGGCTCGAT CGTCGTGGAG AAGGTGTTCA ACTGGCCAGG CCTCGGCCGT
CTGCTGGTGG ATGCGGTGGA AATGCGCGAC TACCCGGTCA TCCAGGCCGA GGTGCTGCTG
TTCTCGCTGG AGTTCATCCT GATCAACCTT GTGGTGGACA TGCTGTACAC CGTCATCAAC
CCCACCATCC GCTACAAAAA GTAA
|
|---|
| Protein sequence | MLNYFIKRAL GVIPTLLIVA VLVFLFVHLL PGDPARLAAG PEADEMTVDL VRKDLGLDKP
MHEQFVRFFA NAARGEFGNS IRTKRPVSEE IGERFWPTLN LTITSMVWAV IFGMVIGITS
AVWRNKWPDR LGMTLAVSGI SFPAFALGML LMEVFSVQLG WLPAIGADTW KHYILPSLTL
GAAVAAVMAR FTRASFVEVL QEDFVRTARA KGVRETVVVI KHCLRNAMIP VVTMMGLQFG
FLLGGSIVVE KVFNWPGLGR LLVDAVEMRD YPVIQAEVLL FSLEFILINL VVDMLYTVIN
PTIRYKK
|
|---|
| |