| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1192 |
|---|
| Symbol | |
|---|
| ID | 6288819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 1279515 |
|---|
| End bp | 1279979 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642624762 |
|---|
| Product | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen |
|---|
| Protein accession | YP_001898768 |
|---|
| Protein GI | 187928281 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1225] Peroxiredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0360155 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.115391 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTCA CGCTCGACCA GCCTCTTCCC GATTTCTCCG CACCGGCCAC CAGTGGCATC
ACGTTCTCGC CGGCGTCACA GCGCGGCAAG ATCGTCGTGC TGTATTTCTA TCCGAAGGAC
AACACCCCCG GCTGCACCAC CGAGGCGATG AACTTCCGTG ACCAGTACGA CGCCTTTGAA
GCCGCCGGCG CCGTGGTGTT CGGCATCTCG CGCGACAGCC TGAAATCGCA CGAAAACTTC
AAGGCGAAAC TGGAGATGCC GTTCGAGCTG ATTTCCGACG CCGACGAAGC CGTCTGCAAC
ATCTTTGACA CGATCAAGAT GAAGAAGATG TACGGCAAGG ACGTGCGCGG CATCGAGCGC
AGCACATTCC TGATCGACAA CAAGGGCGTG CTGCGCAGGG AATGGCGTGG CGTGAAAGTG
CCCAACCATG TGGATGATGT TCTGACGGCG GTACGCGCGC TGTAA
|
|---|
| Protein sequence | MPVTLDQPLP DFSAPATSGI TFSPASQRGK IVVLYFYPKD NTPGCTTEAM NFRDQYDAFE
AAGAVVFGIS RDSLKSHENF KAKLEMPFEL ISDADEAVCN IFDTIKMKKM YGKDVRGIER
STFLIDNKGV LRREWRGVKV PNHVDDVLTA VRAL
|
|---|
| |