| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1171 |
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| Symbol | |
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| ID | 6286419 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 1260493 |
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| End bp | 1261743 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642624740 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001898747 |
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| Protein GI | 187928260 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.137039 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.392599 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCCAC CACTGCTAAA ACTATTCGAG GCGGCCATTA CGCAGGCATG GAATGCCATC
GTGATCACCG ATGCCGACAT CGCTGTCGGT TGCCGAGTGC AATTTGCCAA TCCAGCGTTC
ACAGCCATGA CGGGCTATTC TCTGGACGAG CTACGCGGCC ACTCCCTTAG GATTCTTCAA
GGTCCGGACA CCGATCCGGC ATTGATTGAT GAACTTCGCA TCTGCCTGAA AGAGGCGCGA
CTCTTCGAGG GCACCGCAAC GAACTATCGA AAGGACGGCT CAAGCTACAC CGTCCGCTGG
AGCATTTCAC CAGTTCGCGA CGACAGCGGG TTGGTCACCA ATTTTGTCTC GGTGCAACAG
GATATTTCCG ACTACGAACA GGCAGAGCAG ACAAACAGAC TGCTCGCACG CGCGCTTGAT
GCAACAAGTG ACCCGGTCAT GCTTACGGAT GCAAAAGCTC GGATCATCTT CGCGAATGCT
GCCTTCGCCA AGTCCACGGG CTACACGGTC GACGAAATCC AAGGCAGCAC GCCCGCCATG
TTCAAGTCAG GCAAACATGA CGAGGCTTTT TATGCGGCTA TGCGCCGCTC GCTTGCCAGC
GGACAAAATT TTCGCGCCAC CTTCATCAAT CGGCGCCGTG ACGGCTCGCT CTACCATGCA
GAACAAAGCA TCTCGCCGAT ATTCGGAGAG AAAGGGCGTA TAAGCCACTA CGTTAGTGTG
AGCAAAGACA TTACCAAACG CGTAGAGCGG GAACAGGCAC TGTTACGTGC AGCCACCAAA
GACAAGCTCA CCGGTCTGCA CAATCGTCAC CATGGCGAGC AACTCCTTGC GGAGCGGTAC
AGGACCGCCA GGACGCTGCA GCGCCCCCTT ACCCTCGTCA TGTGCGACAT CGACCACTTC
AAGAGAATCA ATGACGAGTT CGGTCATCCC ACCGGAGACC GCGTACTGGC CGAGGTGGCC
GACATGCTCC GGCAAGCGGT CCGCAGCCGC GACGCTGTCA TTCGCTGGGG TGGCGAAGAA
TTCATGATCG TGCTCGACGA ATGCTCACAG ACGGATACCG TCGACCTTGC CAAGCGCATT
CTCGATCGCG TCAACGCCCA TGAAGATGGG GAAGTCCCCG CGCTGACCCT CTCGCTCGGG
CTCGCGACGC TGGCCCCAGA CGAGGCGATC GATGAGCTCA TCGCACGTGC TGACTCGGCT
CTTTACGATG CGAAACGCGC CGGGCGCAAC CGGCTGTCAA TCGCGGCTTG A
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| Protein sequence | MSPPLLKLFE AAITQAWNAI VITDADIAVG CRVQFANPAF TAMTGYSLDE LRGHSLRILQ
GPDTDPALID ELRICLKEAR LFEGTATNYR KDGSSYTVRW SISPVRDDSG LVTNFVSVQQ
DISDYEQAEQ TNRLLARALD ATSDPVMLTD AKARIIFANA AFAKSTGYTV DEIQGSTPAM
FKSGKHDEAF YAAMRRSLAS GQNFRATFIN RRRDGSLYHA EQSISPIFGE KGRISHYVSV
SKDITKRVER EQALLRAATK DKLTGLHNRH HGEQLLAERY RTARTLQRPL TLVMCDIDHF
KRINDEFGHP TGDRVLAEVA DMLRQAVRSR DAVIRWGGEE FMIVLDECSQ TDTVDLAKRI
LDRVNAHEDG EVPALTLSLG LATLAPDEAI DELIARADSA LYDAKRAGRN RLSIAA
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