Gene Rpic_1131 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1131 
Symbol 
ID6289373 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1209039 
End bp1210283 
Gene Length1245 bp 
Protein Length414 aa 
Translation table11 
GC content64% 
IMG OID642624703 
Product3-hydroxyisobutyryl-CoA hydrolase 
Protein accessionYP_001898710 
Protein GI187928223 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.663045 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.545416 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGTGTCG TCTCCAACTG GCAGGTATAC GCCCAACACC CGCGCTGCGA AAGGGGGCAG 
GCTAGAGCCC TTCCTCGCTT CAATACGCTG TCGTGTACAG TGCGAGCCGT TATTACCCAC
AACAACATTC GAGACATGCA ATCCACCGCT TCCCCCGCGC CCCAGGCTGA AGTTCAACCC
AACGTGATCG CCGAAGTACG CGGCGGCATC GGCTGGCTGA CGCTGAACCG GCCGCAGGCG
CTCAACGCGC TGTCGCTGGA GATGATTCGC GCCATGTCGC ATGCGCTGCT GGCGTGGCAG
CACGATCCGG AAGTCCACGC TGTCATCCTG CGTGGCGAGG GCGGCAAAGC CCTGTGCGCG
GGCGGCGATA TCCGTTTCTT CTACCGCGCG GCCACGGCAG GCGACCCGCA GCTCATCACC
TTTTTCACCG AGGAGTACCG CCTCAACCAC CTCATCTTCA GCTATGCCAA GCCCTACATC
GCGCTGATGG ACGGCGTCGT CATGGGCGGT GGCATGGGCA TCTCGCAAGG CGCATCGCTG
CGCGTGGTGA CCGAACGCAC GAAGATGGCC ATGCCCGAAA CCAACATCGG CCTGTTTCCG
GACGTGGGCG GCGGGTGGTT CCTGGCGCGC GTGCCGGGTC ATGTGGGCGA ATACCTGGGC
GTGACCGGCC AGATGATCGA AGCGGCGGAT GCGTTGTCGA TCGGCCTTGC CGATTGCCAT
GTCACCACCG CGGCGCTGGC GTCCATCTTC CAGCGCCTGC GCGACGGCAA CTGGGGCAGC
GCCGAGCAGA TCACCGCCTG CTTTACCGAA GCCGCATCGG CGCCCGATGA TGCCAAGGCC
ATCATCGCCC TTCACCGCGA GACCATTGAT GCCTGCTTCA GCCAAAGCAG CGTGCAAGGC
ATCTTCGCGG ATCTGGCCGG CAGCACGGAT ACCGAATGGG CCGCTCAGAC CGCCGCGCAC
ATGGCCAAGC GCTCGCCGTT GATGATCGCG GTGACGCTTG AGTTGATCCG CCGCGGCCGC
CACACCACGT TGGCCGATGA GCTGCGCCGC GAACTGGACA TGATGACGCA CGTGTTTGCC
GAAGGCGATG GCATCGAAGG CATTCGGGCC CTCGCGGTCG ACAAGGATCA TGCGCCCAAG
TGGAAGCACG CCAGCATTGA CGCCGTGCGT GACGACGAAG TGGCCGCCTT CTTTGTTTCG
CCTTGGCGCC ATGAGCAGCA TCCGCTGCTG GGGCTGTCGG ACTAG
 
Protein sequence
MCVVSNWQVY AQHPRCERGQ ARALPRFNTL SCTVRAVITH NNIRDMQSTA SPAPQAEVQP 
NVIAEVRGGI GWLTLNRPQA LNALSLEMIR AMSHALLAWQ HDPEVHAVIL RGEGGKALCA
GGDIRFFYRA ATAGDPQLIT FFTEEYRLNH LIFSYAKPYI ALMDGVVMGG GMGISQGASL
RVVTERTKMA MPETNIGLFP DVGGGWFLAR VPGHVGEYLG VTGQMIEAAD ALSIGLADCH
VTTAALASIF QRLRDGNWGS AEQITACFTE AASAPDDAKA IIALHRETID ACFSQSSVQG
IFADLAGSTD TEWAAQTAAH MAKRSPLMIA VTLELIRRGR HTTLADELRR ELDMMTHVFA
EGDGIEGIRA LAVDKDHAPK WKHASIDAVR DDEVAAFFVS PWRHEQHPLL GLSD