| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1130 |
|---|
| Symbol | |
|---|
| ID | 6289372 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 1208121 |
|---|
| End bp | 1209026 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642624702 |
|---|
| Product | fatty acid hydroxylase |
|---|
| Protein accession | YP_001898709 |
|---|
| Protein GI | 187928222 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3000] Sterol desaturase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.507854 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCTG CCAACGCCGC CCCGGGCGCG TCGAGTTTCG ACCCCGGCCT GATCCTTCTG
GCCTTCGCGC CGGTCTTCCT GCTGACCATC GGCGCCGAGG CGTGGTACTG GCGCAAGCGC
GACCCGTCCG TCTACAGCCT CAAAGACACC GTTTCAAACG CCTGCCTCGC GCTCATGCAC
CAGGCGTCGG ATGCGTTCTT CCTGTGGCTG ATGATCAAGA CGGTGTATTC GTGGACGTAC
AGCCACGGCC TGCGCACAGT GCCCGAGACG TGGTGGTCAT TCGTGCTGCT CCTGCTGTTG
CAGGATTTTC TGTACTACTT CTTCCACCGC GCCAGCCATC GCGTGCGCTG GATGTGGGCC
TCGCATGTGA CGCACCACTC GTCGGAAGGC ATGAATTTTT CGACGGCATT CCGCCAGAGC
CTGACCTATC CGATTTCCGG CATGTGGCTG TTCTGGATTC CGCTTGCATG GATCGGCTTT
ACGCCGGACT GGGTGATCCT CGCCGTGGGC TTGAATCTCG CGTTCCAGTT TTTCGTCCAT
ACACGGCTGG GGGCGCTGGA TTCGCGCTAC GCCGGCTTCT GGCGCTGGCT GGGGCAATAC
GTGAATACGC CGTCGGTGCA TCGCGTGCAC CACGCCAAGA ACCCGCAGTA CATCGACCGC
AACTACGCCG GCGTGCTGAC CATCTGGGAT CGCATGTTCG GCAGCTTCGT GCCGGAGGAG
GACGCCCCCG TTTTCGGCAT CACGCGGCAG GTTCACACGC ACAACCCGAT CACCCTCACC
TTCCACGAAT GGCGCGACAT GTGGGCTGAT GTGTTCCGCG ATCGGGACAT TCGCTACCTG
TGGAAACCGC CCGAGTGGCG CAGCCCGCGC GCGGCGGTCA CGGCCGAGGC GATGCCGCTC
ACATGA
|
|---|
| Protein sequence | MTPANAAPGA SSFDPGLILL AFAPVFLLTI GAEAWYWRKR DPSVYSLKDT VSNACLALMH
QASDAFFLWL MIKTVYSWTY SHGLRTVPET WWSFVLLLLL QDFLYYFFHR ASHRVRWMWA
SHVTHHSSEG MNFSTAFRQS LTYPISGMWL FWIPLAWIGF TPDWVILAVG LNLAFQFFVH
TRLGALDSRY AGFWRWLGQY VNTPSVHRVH HAKNPQYIDR NYAGVLTIWD RMFGSFVPEE
DAPVFGITRQ VHTHNPITLT FHEWRDMWAD VFRDRDIRYL WKPPEWRSPR AAVTAEAMPL
T
|
|---|
| |