| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1124 |
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| Symbol | |
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| ID | 6287645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 1200898 |
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| End bp | 1202427 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642624697 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_001898704 |
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| Protein GI | 187928217 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.405736 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCCT TGAACTCCGC CCCTCAGGCA CCTTCGCCCC TAAGCCGCGC TGGCAACACG
CGCGCGCAAT GGCCGGCACG CCTGGGCGTG GCGCTTTCCG CCGTGACGCT GGCCGTGCTG
GCTGGTTGCG CGAACCTCGG CAATTCGCAT AGCACGCAGA CGCTGACAAC ACCGGGGCAG
CTGGCGAGCG CGCAATCGTT GCCCTCAGAA GGCGGCCAGT GGCCTTCGCA GAACTGGGTC
GATCAGTTCG ACGATCCGCA ATTGCGCGCG CTGGTGGATG AGGCCATCAA GGACAACCCG
AACCTGCAAG TCGCCTTTGC CCGCGTCCGA GCTTCGCGTG CGATGGCCGA TGTCGTGCGC
GGCAATCTGT ATCCGAGCGT CGGGCTCGAT GCCGACATGA CGCGCCAGCG TCTATCGGAA
TACGACATGT TTGAAGGCAC GCCGCTGGCC GGCCGCTGGT TCACAGAATC GAAGATCCAG
CTAGGCGTGA GCTACGACCT GGATTTCTGG GGCAAGAATC GCTCCGCATT GGAAGCGGCG
CTGTCCGACG ACAAGTCGAT CGAAGCGGAA AGCCAGGCTT CGCGACTGAT GCTGTCGACC
ACGGTGGCAC GCACCTACGC CAAGCTGGCT GCACTCTATG CGCAGCGCGA CGTGGCTGAA
CGGTCCATCG CGCAGCGCAA GGATTTGACC AACCTTGCCG GCCAACGCTT GCGTGCCGGC
CTGGATACGC AAGTCGAGAC CACGCAGGCG CGCGCCAACG TGGCTGCCGC GCAGACGGAA
CTGGAGCAGG TTGACGAGCA GATCACGCTG GCACGCAACC AGCTGGCTGC GCTACTGGGC
AAGGGCCCGG ACCGCGGCTT GACGATTGCG CGCCCGACGC TGCTCGCACA AGCCACGCCC
AAGCTGCCGA ACAATCTGAC CATCGATCTG ATCGGCCGCC GCCCGGATCT CGTGGCTGCA
CGCTGGCGAG TGGAAGCAGC GTCGAAGGAC ATCGACGTGG CCAAGGCACA GTTCCTGCCG
GATATCAGCC TGACTGCATT CCTGGGGCTG GCTTCGATCG CGCCGGAAAA CCTGCTGCTC
GGCGCATCGC GTCAGCTCGG CATCGGTCCG GCGCTCAAGC TGCCGATCTT CGAGGGCGGC
AAGCTGCGCG CCAACCTGCG GGGCAAGTAC GCCAACTATG ACGCCGCCGT CGCCAGCTAC
AACCAGACGC TGACCGAAGC CCTGCACGAC ACCGCTGACC AGATCACCAC GCTGCACAGC
ATCGATTCGC AGATCACGAT CCAGCGCACG GCCCTAAGCG AAGCTGAGCG TGCCTACAGC
CTGGCCCGCA CGCGCTACAG CGCCGGCCTC GGCACGCAAC TGGTCGTGCT GAACGCCGAG
ACGACCGTGC TGCAGCAACG CAAGCTCGCG ACCGACCTGC AGGCACGCCG ACTCGACGCG
CAGATGGCCC TCATCAAGGC CCTCGGCGGC GGCTATACGG CAGAAGACCT GCCGGGCGCC
AAGCCTGAGG CCGCCGCCTC GCATGGCTGA
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| Protein sequence | MNALNSAPQA PSPLSRAGNT RAQWPARLGV ALSAVTLAVL AGCANLGNSH STQTLTTPGQ
LASAQSLPSE GGQWPSQNWV DQFDDPQLRA LVDEAIKDNP NLQVAFARVR ASRAMADVVR
GNLYPSVGLD ADMTRQRLSE YDMFEGTPLA GRWFTESKIQ LGVSYDLDFW GKNRSALEAA
LSDDKSIEAE SQASRLMLST TVARTYAKLA ALYAQRDVAE RSIAQRKDLT NLAGQRLRAG
LDTQVETTQA RANVAAAQTE LEQVDEQITL ARNQLAALLG KGPDRGLTIA RPTLLAQATP
KLPNNLTIDL IGRRPDLVAA RWRVEAASKD IDVAKAQFLP DISLTAFLGL ASIAPENLLL
GASRQLGIGP ALKLPIFEGG KLRANLRGKY ANYDAAVASY NQTLTEALHD TADQITTLHS
IDSQITIQRT ALSEAERAYS LARTRYSAGL GTQLVVLNAE TTVLQQRKLA TDLQARRLDA
QMALIKALGG GYTAEDLPGA KPEAAASHG
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