| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1079 |
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| Symbol | |
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| ID | 6288595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 1147535 |
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| End bp | 1151536 |
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| Gene Length | 4002 bp |
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| Protein Length | 1333 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642624652 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_001898659 |
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| Protein GI | 187928172 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.880342 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGATT CCCACGCCCA GCCGCCCCGG CCACGCCCGC CGGCGCCCTC TCAGAAACCG
CCGAAAGACA CGCCGCCGCC CGAGCGCAAG CCCGGTGGCA ATGCGCGTCC GCAGCGCCGC
CAAAAGCCCA CGCCAGAAGA ACTCGCCGCG GCGCTCGAGG CGCGCCGCGC ACGTGCGAAC
CGCGTCCCGC CGATCACGTT TCCCGAAGCG CTGCCTGTGT CGGCCAGGCG CGACGAGATC
GCCCAGGCCA TTGCCGCGAA CCAGGTGGTG ATCGTCTCGG GCGAGACCGG CTCGGGCAAG
ACCACGCAGT TGCCGAAGAT CTGCTTGTCG ATCGGGCGAG GCATCGGCGC GGGCGGTACC
GGGCTGATCG GTCATACGCA GCCGCGCCGG ATTGCCGCGA CGTCTACCGC CAAGCGCATC
GCGCAGGAAA TCGGCACGCC GGTGGGCGAG CACGTGGGCT TCCAGGTGCG GTTCAATGAC
ACGCTGTCGG CGGGCGCGTC GGTCAAGCTG ATGACCGACG GCATCTTGCT GGCCGAGACG
CAGAACGATC CGTTGCTGCG CGCCTACGAC ACGATCATCA TTGACGAGGC GCACGAACGC
AGCCTCAACA TCGACTTCCT GATCGGCTAT CTCAAGCAGC TTCTGCCGCG CCGCCCGGAT
CTGAAGCTGA TCATCACCTC CGCAACCATC GACGCAAAGC GGTTTGCCGA GCACTTTGCC
GGCCCAAAGG GGCCGGCGCC GGTCATCGAA GTCAGCGGGC GGTTGTATCC GGTCGAGGTG
CGCTACCGCC CGATCCAGCG CGACGAGAAA GACAAGGAGC GCGATCTTTA CGAAGCGCTC
GTCGATGCGG TCGATGAACT CGCCCGCGAA GGCCCGGGCG ACGTGCTCAT CTTCCTGCCG
GGCGAACGCG AGATTCGCGA GGCGGCCGAG GCGCTGCGCA AGCACCATCC GGCGCATACC
GAGATCCTGC CGCTCTTTGC GCGCTTGTCC GTGCAGGAGC AGGAACGTGT GTTCCGGCCG
TCCAACGCAC GCCGCATCGT GCTGGCGACC AACGTGGCCG AGACCTCGCT CACGGTGCCG
GGTATTCGCT ACGTGGTCGA TACGGGGCTG GCGCGCGTCA AGCGCTATTC CTATCGCAAC
AAGGTCGAGC AACTGCAGAT CGAGCCGGTG TCGCAGGCTG CGGCCAACCA GCGTGCCGGT
CGTTGCGGCC GGGTGGCCGA TGGCGTCTGC ATTCGCCTGT ATGACGAGGC GGATTTCATT
GCGCGGCCGC GTTTCACCGA TCCGGAAATT TTGCGGTCGT CGCTGGCGGC AGTCATCCTG
CGCATGAAGG CACTGCGGCT GACGGACGTC GAGCAGTTCC CCTTCATCGA GCCGCCGCTG
GGCCGTGCGA TTGCCGATGG CTATCAGCTC TTGCAAGAAC TCGGTGCCGT CGACGATGAG
AATGCGCTGA CCCCGCTGGG CAAGCAGGTC GCTCGCTTGC CGCTGGACCC ACGCGTGGCG
CGGATGATTC TGGCCGGCCG CGACCACCAG TGCCTGCGCG AGATGCTGAT CATCGCAAGC
GCCTTGTCCG TGCAAGACCC ACGGGAGCGC CCGCAAGAAC TGCAGCAGCA GGCGGATCAA
GCGCACCGCC AGTTTGCCGA CGAGAAATCG GAGTTCCTCG GCTGGGTGAA GCTCTGGAAG
TGGTTTGAAG AGGCCGTCGC GCACAAGAAG TCGAACAAGC AGCTGCAGGA GCAGTGCCGT
TCGCACTTCC TGTCGCATGT GCGGCTGCGG GAATGGCGCG ACGTGCATTC GCAGTTGCAC
ACCACGGTGG CGGAGCAGGG CTGGAAGCTC AACGAATCCG ATCCGACGTA TGAACAGTTG
CATCTGGCGC TGCTGACGGG CCTCCTTGGC AACATCGGTG TGCGCATCGA GGAGGCGGAT
GGGAAAGGCC GTGAATATCT CGGCGCGCGC GGCATCAAGT TCTTCCTGTG GCCGGGGTCG
GTCATTGCGC GCAAGGCGGG CAAGTGGGTC GTAGGCGGCG AACTGATCGA GACCAGCCGC
CTGTTCGGTC GCACGCTGGC ACGCATCGAG CCGGAATGGG TCGAGAAGGT CGGGGCGCAC
CTGTTGAAGG TGTCGTGGAG CGATCCGCAT TGGGAAAAGA AGGCCGGCCA GGTGATGGCC
TTCGAGCGCG GCACGCTGTA CGGCCTGCCG ATCTATCAAC AGCGCCGCGT GCACTTTGGG
CCGATGCAGC CGAAGGAAGC GCGCGAGATG TTCATCCGCC GCGCGCTGGT CGATGGCGAG
TTCGAGACGC GCCTGCCGTT CTTCACGCAC AACCAGCGCC TGGTGCGCGA GATCGAAAAC
CTCGAACACA AGTCACGCCG GCAAGACGTG CTGGTGGACG ACGAGTTGAT CTACGCGTTC
TACGACAGCC AGATCCCGGC GGACATTTAC AACACCGTGT CGTTCGAGCG CTGGTATGCC
GAGGCCGCCA GCGCGGGCGG CAAAAGCGGC CAGAAGCTGC TGTACCTGAA TCGCGATGAC
CTCATGCGGC ATGAGGCGGC CGGCATCACG ACCGACCTGT TCCCGAAGGT GCTGCCGATT
GCCGGTATCG ACATGGGCCT GACGTACCAC TTCGAGCCCG GCAGCCCGCG CGATGGCGTG
ACCCTCACCG TGCCGCTGTA TGCGCTTAAC CAGGTCCCTG CGCAGCGCAC CGAATGGCTG
GTCCCGGGCA TGCTCAAGGA GAAGGTGCAT CTGCTGCTGA AGAGTCTGCC GCAGAAGCTG
CGCCGCCATT GCGTGCCGTT GCCGGACTAC GCCGCCGGAT TCGTCGCGCG CGTGCGGTTG
GGGGATGGCG ATCTGCTCGA CCGCTTGATC GCCGACGTGC GCGAGCAGAC CGGCATGGCG
CTCAAGCGCG CCGACTTTAA GCTCGAGACG CTGCCCGCGC ATCACTTCAT GAACTTCAAG
GTGATCGACG AGCACGGCCG GCAGCTCGAC ATGGGCCGCA ATCTAGCCCA GTTGCGCGCG
GAACTGGGCG GACGCGCGCA GCAGACCTTT CAGTCGATCG CCGCGCAGGA TGCTGCCGTG
GCTGGCACCC CGAGCGAGGG CACCAAGGCA GGCCAAGCCG GCAAGAGTGG CAAGGCGGAA
GCCCCGGCCA ACGCCGCGCT GTACTCGGGG CTGACCACCT GGAATTTCGG CGAGTTGCCG
GAACTGCTGG AAGTCCGCAA AGGCAGCCAG ACGCTCTTCG GCTATCCGGC ACTCGTCGAT
GCCGGCGATC ACTGCGACGT GGAAGTTTTC GACGACCCGG CGCAAGCCAC GCGCATCCAT
GGCCTGGGCT TGCGCCGGTT GTTTGCGATC CAGCTGCGCG AGCCGTTGAA GTACCTGGAA
AAGAACATCC CGGGCCTGTC GCAGATGGCG ATCCAGTTCA TGAACCTGGG CACGCAGGAC
GATCTGCGTG ACCAGATCCT GGATGCCACG CTGGAGCGTG CCTGCCTGCA AGACCCGCTG
CCCATCGATG ACGCCAGTTT CGGTGCCCGC AAGGACGAAA GCCGCGCGCG CCTGACGTTG
CTGGCGCAGG AAATTGCACG GCTGGTCGGC GCCATCCTGG CCGAATATGC GCAACTGCCG
CGCAAGCTGC AGATCGCCAA GCCGTTTGCT GCAGCCACCG CCGACATCGA CGCACAGCTC
AAGACGCTGA TGCACAAGCG TTTTATCGAG GCGACGCCGT ATGCGCAGTT GACGCACTTT
CCGCGTTATC TGAAGGGCAT CGCGCTGCGC ATCGATAAAC TCAAGGCGGA CCCGGCCCGC
GATACGCAAC GCATGCAGGA GATGGCGCCG CTCATCCAGC AATACCAACG CGCGGAAAAG
GCGCTGCGCG TGCAAGGGCA GGGCGGCAAC GACCCGCGCA TGGAGGAATT CCGCTGGATG
CTTGAGGAGC TGCGTATCGC TCTGTTTGCA CAGGAATTAC GCACGCCGGT GCCGATGTCG
GTCAAGCGGC TGCAGAAGGT GTGGGAATCG ATGCAGCGAT AG
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| Protein sequence | MSDSHAQPPR PRPPAPSQKP PKDTPPPERK PGGNARPQRR QKPTPEELAA ALEARRARAN
RVPPITFPEA LPVSARRDEI AQAIAANQVV IVSGETGSGK TTQLPKICLS IGRGIGAGGT
GLIGHTQPRR IAATSTAKRI AQEIGTPVGE HVGFQVRFND TLSAGASVKL MTDGILLAET
QNDPLLRAYD TIIIDEAHER SLNIDFLIGY LKQLLPRRPD LKLIITSATI DAKRFAEHFA
GPKGPAPVIE VSGRLYPVEV RYRPIQRDEK DKERDLYEAL VDAVDELARE GPGDVLIFLP
GEREIREAAE ALRKHHPAHT EILPLFARLS VQEQERVFRP SNARRIVLAT NVAETSLTVP
GIRYVVDTGL ARVKRYSYRN KVEQLQIEPV SQAAANQRAG RCGRVADGVC IRLYDEADFI
ARPRFTDPEI LRSSLAAVIL RMKALRLTDV EQFPFIEPPL GRAIADGYQL LQELGAVDDE
NALTPLGKQV ARLPLDPRVA RMILAGRDHQ CLREMLIIAS ALSVQDPRER PQELQQQADQ
AHRQFADEKS EFLGWVKLWK WFEEAVAHKK SNKQLQEQCR SHFLSHVRLR EWRDVHSQLH
TTVAEQGWKL NESDPTYEQL HLALLTGLLG NIGVRIEEAD GKGREYLGAR GIKFFLWPGS
VIARKAGKWV VGGELIETSR LFGRTLARIE PEWVEKVGAH LLKVSWSDPH WEKKAGQVMA
FERGTLYGLP IYQQRRVHFG PMQPKEAREM FIRRALVDGE FETRLPFFTH NQRLVREIEN
LEHKSRRQDV LVDDELIYAF YDSQIPADIY NTVSFERWYA EAASAGGKSG QKLLYLNRDD
LMRHEAAGIT TDLFPKVLPI AGIDMGLTYH FEPGSPRDGV TLTVPLYALN QVPAQRTEWL
VPGMLKEKVH LLLKSLPQKL RRHCVPLPDY AAGFVARVRL GDGDLLDRLI ADVREQTGMA
LKRADFKLET LPAHHFMNFK VIDEHGRQLD MGRNLAQLRA ELGGRAQQTF QSIAAQDAAV
AGTPSEGTKA GQAGKSGKAE APANAALYSG LTTWNFGELP ELLEVRKGSQ TLFGYPALVD
AGDHCDVEVF DDPAQATRIH GLGLRRLFAI QLREPLKYLE KNIPGLSQMA IQFMNLGTQD
DLRDQILDAT LERACLQDPL PIDDASFGAR KDESRARLTL LAQEIARLVG AILAEYAQLP
RKLQIAKPFA AATADIDAQL KTLMHKRFIE ATPYAQLTHF PRYLKGIALR IDKLKADPAR
DTQRMQEMAP LIQQYQRAEK ALRVQGQGGN DPRMEEFRWM LEELRIALFA QELRTPVPMS
VKRLQKVWES MQR
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