| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1072 |
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| Symbol | |
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| ID | 6289439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 1139596 |
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| End bp | 1142190 |
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| Gene Length | 2595 bp |
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| Protein Length | 864 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642624645 |
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| Product | ribonuclease R |
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| Protein accession | YP_001898652 |
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| Protein GI | 187928165 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAATCAAC CGACTTATCC GATCCCGAGC CGCGAGGAAA TCCTCGGTGT GCTGCGCACG
TCGGGGTCTC CGCTGTCTGC CACCGATATT GCCAAGGCGC TGTCGGTCAC GCGCAAGGAG
CATGACGGCT TTATCAAGCG TCTGACCGCC ATGGAGCGGG ACGGTCAGAT CGAACTCAAC
CGCAAGGGGC ACTACGAACT GGCGCACCAG CCCAATTTCA TCGAAGGCCG GGTAATTGGC
CATCGCGATG GCTTCGGCTT TTTCGTACGC GATGACGGCG AGCCCGATAT CTTCCTGCCC
GAACGAGAGA TGCAGAAGGC CATGCACGGC GACCGCGCCC TGGTGCGCAC CGTCGGCTAC
GATCGACGCG GGCGTTCGGA AGGGCAGATC GTCGAGATCC TGCAGCGGGC CAACAAGCGC
GTCATCGGCC GGTTGCTTTC TGAAAGCGGC ACGCTGGTCG TGGCGCCCGA AGACAAGCGG
CTCGGCCGCG ACATCCTGAT CGCGCCCAAG GGCCAGGGCA AGGCCAAGGT CGGTCAGGTG
GTGAGCGTTG AGATCCTGGA GTATCCGGAT CGCTACGTGC AGCCGATTGG CCGCGTGGTC
GAAGTGCTGG GTGAGATTGA TGACCCTGGC ATGGAGATCG AAATTGCCGT GCGCAAGTAC
GGCGTGCCGC ACGAGTTTTC TGAGCCGACG CAACGCGAGG CGGAAGCGCT GTCCGACGTG
GTGCGCGATG CCGATCTGGC TGGCCGCATA GACTTGCGCG ATGTGTCGCT CGTCACCATC
GACGGAGAAG ATGCGCGCGA CTTCGATGAT GCTGTCTATG CAGAGCCGGT CAAGATCGGT
CGCACCAAGG GCTGGCGCCT GATTGTGGCG ATTGCCGACG TGTCGCATTA CGTGCGGCCG
GGGCATCCGC TGGATGCAGA CGCCATTGAT CGCGCGACTT CGGTCTATTT CCCGCGCCGC
GTGATCCCGA TGCTGCCGGA GAAGCTCTCC AACGGCTTGT GCTCTCTGAA TCCGGAGGTG
GACCGCCTGT GCATGGTCTG CGATGCGGTG ATCACGGCCA AGGGCGAGAT CAAGGCCTAT
CAGTTCTATC CGGCGGTGAT GCACTCGAAG GCGCGCCTGA CCTACAACGA GGTCTGGGCC
ATCCTGTCAA ACGTAAAGGG TCCGGAAGCG GCCAAGCGGG CGCCGCTGGT GCCGCATCTG
CAAGACCTGT ACGAGCTGTA TCAGACGCTG CTCAAGGCAC GCCGCGAGCG TGGCGCGATC
GACTTCGACA CCACCGAGAC GTACATCGTC TGCAACGCCC AGGGCAAGAT CGAGCAGATC
CTGCCGCGCA CCCGAAACGA TGCACACAGG CTGATCGAGG AGTGCATGCT GACGGCCAAC
GTCTGCGCGG CCGAGATGCT GGAGAAGTAC AAGCACCCGG CGCTGTACCG TGTCCATGCA
GGTCCGACTG AGGAAAAGCT GCAGGCTCTG CGCGCCTTCC TGAAAACCAG CGGCTTGACG
CTGGGCGGTG GCGACAAGCC GCAGGCCGCC GATTACGCCG AACTCATGGA AAAGGTGGCC
GCCCGTCCTG ACGCACCGAT GCTGCAGACC ATGTTGCTGC GCTCGATGCA GCAGGCGGTC
TACAGCCCGG ACAACATCGG TCACTTCGGT CTGGCGTATC CCGCGTATGC GCACTTCACG
AGCCCGATCC GCCGCTATCC GGACCTGCTG GTGCATCGCT CCATCAAGGC GATTCTGCAT
CGCACGCGTT ATGTGCCGGC GCTGGCACCG GGCGTGCTGT TGAACAGCGC GCTATCGCCC
AAGGCGCGTC GTCTGCAGGC CGAAGCTGAG AAAGGCGTGC CGGCTGCGGT TGTCAACAAG
GCGAAGGTCG AAGCGATCTG GCATGAGCTG GGCGTGCATT GCTCGGCCAA CGAGCGTCGC
GCCGACGAAG CCTCGCGCGA CGTCGAGGCG TGGCTCAAGT GCTACTTCAT GCGCGACAAG
CTCGGCAACG AGTTCTCGGG CACCGTCAGC GCCGTCACCT CGTTCGGCAT CTTCGTGCAG
CTCGACGAGT TGTACGTGGA AGGTCTGGTA CACGTGACTG AGCTGGGCAG CGATTACTTC
CAATACGACG AAGCGCGCAA CGAGCTGCGC GGCGAGCGCA CGGGCATCCG TTATCGCCTG
ACCGACCGCG TGCGCGTGCA GTTGCTGCGC GTCGATCTGG ATGCCCGGAA GATGGATTTC
CGCCTGATCC AGGAGCCGTC GACCAAGGCG CTGCGCCCGG CCAAGGTGAC CGGCGCGCCC
GAAGCCTCGG TGGCGCGTCA GCCTGCCGGG GCGACGCCGG CGCCGCCGGT TGGCCGCAAG
AAGCCGCGCC AGTTGGCCGC ATTGTTGGGC GGTACGGCCA AGCCGGAGGA GTCGTTCGAC
GAGACGCTCG ATCGCGTCAT CGAAGAGCAG CCGGTGTTCG AGCCGGGTAG CCGTGCACTG
CCCCCGGGCC ATGCCCACGC AAAGCCTGCG CGCAAGAAGC AGACGGCGCG TGGCACCAAG
CCCAAGGGTG GCGCCAAGAC CGCTGCGCCG CGCAAGGTGG CAGGCAAGGC CCCGCGCAAG
ACCAAGGGGC GTTAA
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| Protein sequence | MNQPTYPIPS REEILGVLRT SGSPLSATDI AKALSVTRKE HDGFIKRLTA MERDGQIELN
RKGHYELAHQ PNFIEGRVIG HRDGFGFFVR DDGEPDIFLP EREMQKAMHG DRALVRTVGY
DRRGRSEGQI VEILQRANKR VIGRLLSESG TLVVAPEDKR LGRDILIAPK GQGKAKVGQV
VSVEILEYPD RYVQPIGRVV EVLGEIDDPG MEIEIAVRKY GVPHEFSEPT QREAEALSDV
VRDADLAGRI DLRDVSLVTI DGEDARDFDD AVYAEPVKIG RTKGWRLIVA IADVSHYVRP
GHPLDADAID RATSVYFPRR VIPMLPEKLS NGLCSLNPEV DRLCMVCDAV ITAKGEIKAY
QFYPAVMHSK ARLTYNEVWA ILSNVKGPEA AKRAPLVPHL QDLYELYQTL LKARRERGAI
DFDTTETYIV CNAQGKIEQI LPRTRNDAHR LIEECMLTAN VCAAEMLEKY KHPALYRVHA
GPTEEKLQAL RAFLKTSGLT LGGGDKPQAA DYAELMEKVA ARPDAPMLQT MLLRSMQQAV
YSPDNIGHFG LAYPAYAHFT SPIRRYPDLL VHRSIKAILH RTRYVPALAP GVLLNSALSP
KARRLQAEAE KGVPAAVVNK AKVEAIWHEL GVHCSANERR ADEASRDVEA WLKCYFMRDK
LGNEFSGTVS AVTSFGIFVQ LDELYVEGLV HVTELGSDYF QYDEARNELR GERTGIRYRL
TDRVRVQLLR VDLDARKMDF RLIQEPSTKA LRPAKVTGAP EASVARQPAG ATPAPPVGRK
KPRQLAALLG GTAKPEESFD ETLDRVIEEQ PVFEPGSRAL PPGHAHAKPA RKKQTARGTK
PKGGAKTAAP RKVAGKAPRK TKGR
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