| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1059 |
|---|
| Symbol | ispG |
|---|
| ID | 6288151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 1125040 |
|---|
| End bp | 1126326 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642624631 |
|---|
| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
|---|
| Protein accession | YP_001898639 |
|---|
| Protein GI | 187928152 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0257529 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATCT CCACGCCTCT CGATTGCGCT CCAGCCTTGG TGGGCCCGCT GCCGCGCCGG
AACTCGCGCG CCGCGCAAAT CCGCTGGGGT GATCGTGTCG TGCACGTCGG TGGCGACGCG
CCGGTCTGCG TGCAATCGAT GACGAATACC GACACTTCGG ACGCCATCGG TACCGCAATC
CAGGTAAAGG AGCTGGCGCG TGCCGGCTCT GAGTTGGTGC GCATCACAGT GGATACCCCG
GCCGCCGCGG CCGCGGTGCC TGCCATCCGC GAGCAGCTCG ACCGCATGGG TGTGGATGTG
CCGCTTGTCG GCGATTTCCA CTACAACGGC CACAAGCTGC TGCAGGACTA TCCGGAGTGC
GCGCAGGCGC TATCCAAGTA CCGGATCAAC CCCGGCAACG TCGGGCAGGG TGCCAAGCGC
GACACGCAGT TCGCGCAGAT GATCGAGATT GCTTGCCGCT ATGACAAGCC GGTGCGTATC
GGCGTGAACT GGGGCAGCCT CGATCAGGAT CTGCTTGCGC GCATCATGGA CGAGAACGCG
CAACGTGCAA CCCCCTGGGA TGCCCGCGCC GTGATGGTCG AGGCGCTGAT CACCTCCGCG
ATCCAGTCCG CGCAAAAGGC TGAAGAACTG GGCTTGCCAG GCAGCCAGAT CATCCTGTCG
TGCAAGGTGT CGGCGGTGCA GGATCTGATT GCTGTGTACC GCGAGTTGGC GCGTCGCTGC
CATTACGCGC TGCACCTGGG CCTGACCGAG GCCGGCATGG GGAGCAAGGG TATCGTCGCT
TCCACGGCGG CGTTGTCGGT GCTGCTGCAG GAAGGCATCG GCGACACGAT CCGCATTTCG
CTCACGCCGG AACCGGGTGC GCCGCGCGAG AAGGAAGTCA TCGTCGCGCA AGAGATTCTG
CAGACCATGG GCCTGCGCAA TTTCACGCCC ATGGTGATCG CGTGCCCGGG TTGCGGGCGC
ACGACCAGCA CGGTGTTCCA GGAACTGGCG GCGCGCATCC AGTCGTATTT GCGCGAGCAG
ATGCCGGTGT GGAAGGAGCA GTACCCCGGC GTCGAAGAGA TGAATGTGGC CGTGATGGGC
TGCATCGTCA ACGGCCCCGG AGAGAGCAAG CACGCCAATA TCGGCATTTC GCTGCCAGGC
ACGGGCGAGT CGCCGGCGGC GCCGGTTTTC GTTGACGGCG TGAAGGTGAA AACACTGCGC
GGCGAGCGCA TCACAGAAGA ATTCCAGGCG ATCGTCGACG AGTACGTGCG GACGCATTAC
GGCGCACAGA CTCCTGCGAC GGTCTAA
|
|---|
| Protein sequence | MEISTPLDCA PALVGPLPRR NSRAAQIRWG DRVVHVGGDA PVCVQSMTNT DTSDAIGTAI
QVKELARAGS ELVRITVDTP AAAAAVPAIR EQLDRMGVDV PLVGDFHYNG HKLLQDYPEC
AQALSKYRIN PGNVGQGAKR DTQFAQMIEI ACRYDKPVRI GVNWGSLDQD LLARIMDENA
QRATPWDARA VMVEALITSA IQSAQKAEEL GLPGSQIILS CKVSAVQDLI AVYRELARRC
HYALHLGLTE AGMGSKGIVA STAALSVLLQ EGIGDTIRIS LTPEPGAPRE KEVIVAQEIL
QTMGLRNFTP MVIACPGCGR TTSTVFQELA ARIQSYLREQ MPVWKEQYPG VEEMNVAVMG
CIVNGPGESK HANIGISLPG TGESPAAPVF VDGVKVKTLR GERITEEFQA IVDEYVRTHY
GAQTPATV
|
|---|
| |