| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1053 |
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| Symbol | rumA |
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| ID | 6289099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 1118986 |
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| End bp | 1120338 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642624625 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001898633 |
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| Protein GI | 187928146 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0704597 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGTGG CGGGCCCGCT CGACATCGTC TCGCTGGATG GCGAAGCGCG CGGCATCGGC
CGTTTGACCA ACGAGGACGG CACGCCGGGG AAGGTTGTGT TCGTGGAAGG CGCGTTGCCG
GGGGAGCGGG TCATGTACCG CAGTCACCGC GTAAAGCCGT CGTACGAGCA GGCGGGTGTC
GTCAACATTC TGCGCCAGTC TGCTTCACGC GTGACGCCGC AGTGCAAGTT CTTTGGAGTG
TGCGGTGGCT GCTCGATGCA GCATCTGGAT TCGCGCGCAC AGGTTGCGAT CAAGCAGCGC
GTGCTGGAAG ACGACCTCTG GCATCTGGCC AAGCTGCGTC CCGACGTAGT ATTCCGCCCC
ATTGCTGGCC CGGATTGGGG CTATCGCTAT CGCGCCCGTC TGACCGTGCG CCATGTTGCG
GCCAAAGGCG GCGTACTGGT GGGTTTTCAC GAGCGAAAGA GCAGCTATGT GGCGGACATG
ACGTCGTGCG AGGTGTTGCC GCCGCACGTG TCCGCGCTGC TGGTTCCGTT GCGCGAATTG
GTGGGCCGCC TGTCGATCGT ACAACGTATG CCGCAGATCG AACTGGCGGT CGGCCAGGAT
GTAACCGCGC TGGTGTTGCG CAACCTAGAG CCGATTACCG CTGAGGATGA GGCGGAGCTG
CGTGCTTTCG CCGATCATCA CAACATCCAG TTCTGGCTGC AGCCGAAGGG CCCGGATACG
GTCTATCCGT TCTATCCGCT CGATCGCACG CTGACGTACA CGTTGCCCGA GTTCGGCATC
ACCATGCCGT TCAAGCCGAC GGATTTCACG CAGGTCAATC ACCAGATCAA CCGGGTGCTG
ATGTCGCGCG CGCTGAAACT GCTCGACGCG CAGCCGGGCG ATCGGCTGCT CGACCTGTTC
TGCGGTATCG GCAATTTCAC GCTGCCGATG GCCACACGTG CCCGCGAGGT TATGGGCATC
GAAGGCAGTG AGGCGCTGAC GACACGTGCG CTTGCCAACG CCCAGCACAA TGGCCTGCAC
ACGAAGACCT CATTCGCTTG CCGCAATCTG TTTGAGGTGT CGGCTGATGA CGTTGCCGCG
CTGGGCAAGT TTGATCGTTG GCTGATCGAT CCGCCCCGCG AAGGGGCGCT GGCCGTGTCC
AAGGCGCTGG CCGAGCTGTC GCAGAGCGGC GGTGATGCGG CCGATTTGCT GCCGAAGCGC
ATCATCTATG TGTCGTGCAA TCCGGCGACG CTGGCGCGCG ACGCAGGCTT GCTGGTGCAC
GAGGCAGGCT ACCGACTGGC GGGTGCGGGC GTGGTGAACA TGTTCCCGCA CACGTCGCAT
GTTGAGTCGA TGGCGGTGTT CGAGCGCGAC TGA
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| Protein sequence | MPVAGPLDIV SLDGEARGIG RLTNEDGTPG KVVFVEGALP GERVMYRSHR VKPSYEQAGV
VNILRQSASR VTPQCKFFGV CGGCSMQHLD SRAQVAIKQR VLEDDLWHLA KLRPDVVFRP
IAGPDWGYRY RARLTVRHVA AKGGVLVGFH ERKSSYVADM TSCEVLPPHV SALLVPLREL
VGRLSIVQRM PQIELAVGQD VTALVLRNLE PITAEDEAEL RAFADHHNIQ FWLQPKGPDT
VYPFYPLDRT LTYTLPEFGI TMPFKPTDFT QVNHQINRVL MSRALKLLDA QPGDRLLDLF
CGIGNFTLPM ATRAREVMGI EGSEALTTRA LANAQHNGLH TKTSFACRNL FEVSADDVAA
LGKFDRWLID PPREGALAVS KALAELSQSG GDAADLLPKR IIYVSCNPAT LARDAGLLVH
EAGYRLAGAG VVNMFPHTSH VESMAVFERD
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