| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1039 |
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| Symbol | |
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| ID | 6287158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 1104529 |
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| End bp | 1105917 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642624611 |
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| Product | Carbohydrate-selective porin OprB |
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| Protein accession | YP_001898619 |
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| Protein GI | 187928132 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3659] Carbohydrate-selective porin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.661938 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTCGC TGCCTCTTCA CGTCATCCCT CGCCGTCCAT TCACTCTGAT GGGAGCCGTG
CAACAAGCCA CGGCGGCCTT CATGCTCGTA TTGAGTCTGC AAAGCGCTGC GCTGGCGGCT
GGCGCCGATA CGCCTGCCAC GGACATCCCA GAGCCGGAGC GATGGAACGT GCATGGACAG
TTCACCAATG TGACGCAATG GCATCCGTCG TTCCGCTCGC CGTACAGCGG CACCAATAGC
CTCACGCCTG ACAACAACAC CAAGGAGACG GTCGACGTCA CGCTCTACCT CGGGCTGCGC
CTGTGGAAGG GTGCCGAGCT GTACGCGAAC CCGGAAATCG ACCAAGGTTT CGGACTAAGC
AATACGGTCG GCCTGGCCGG CTTCTCAAGC GGGGAGGCCT ACAAGATCGG CAACAATGCT
CCCTACCGCA AGCTGCCGCG CTTGTTCCTG CGGCAGGTCA TCAATCTCGG CGGCGAGCAG
CAGGCAGTAG AGTCAGCCCC CAACCAGCTT GCCGGCAGCC GCTCGGCAGA CAACGTCACC
ATCACCGTCG GCAAGTTCTC GGTGGCAGAC ATATTCGACA CGAACACGTA CGCGCACGAC
CCGCGGGGCG ATTTCCTGAA CTGGGCGGTG ATCGATGCCG GCGCATTCGA CTATGCAGCG
GACGCCTGGG GCTACACGCA TGGTCTGGCG GTGGAATGGA CGCAATCGTG GTGGTCGCTG
CGCGGCGGAC TCTTCGCGCT TTCGATGGTA CCCAACAGTG TCACGATCGA CACCACGTGG
AAGCAGTACC AGTGGGTGGG CGAATTTGAA GCGCGCCATG ATTGGTTCGG CCGCCCGGGC
AAGGTCAAGC TGCTCGCCTT TGCAACGCGA GGCCGGATGG GTGGTTATGG CGATGCGGTC
AACCTCGCCC AACAGACGGG CAACACGCCG GACACGGGCC TCGTGCGGCG CCTCGCCTGG
CGCCCCGGTG TTGCCTTGAA CCTGGAGCAG GAAATCACCT CCGACCTGGG CGTCTTCGCA
CGGGCCAGCA TGAACGACGG CAGCAAGGAA ACATTCGAGT TCACCGACAT CAACCAGTCG
GTGTCGGCCG GGTTCTCCCT GAAAGGCAAT CGTTGGGGAC GCCCGAACGA CACGTTCGGT
GCCGCCGTGG TGGTGAACGG CTTGTCGCGC GCGGCACGCC AATATTTCGC GGCCGGCGGC
ATGGGCGTAC TGATTGGTGA TGGCGCCCTC AACTACGGCA CCGAACGCAT CGCCGAGCTG
TACTACAACT GGGCGGCCAT CAAACACCTC ACGCTGGGCC TGAACTACCA GTATGTGGTC
CATCCGGCGT ACAACCGGGA TCGCGGCCCG GTATCAATCG TCGGGGCACG CGTCCACGCT
GAATTTTAA
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| Protein sequence | MPSLPLHVIP RRPFTLMGAV QQATAAFMLV LSLQSAALAA GADTPATDIP EPERWNVHGQ
FTNVTQWHPS FRSPYSGTNS LTPDNNTKET VDVTLYLGLR LWKGAELYAN PEIDQGFGLS
NTVGLAGFSS GEAYKIGNNA PYRKLPRLFL RQVINLGGEQ QAVESAPNQL AGSRSADNVT
ITVGKFSVAD IFDTNTYAHD PRGDFLNWAV IDAGAFDYAA DAWGYTHGLA VEWTQSWWSL
RGGLFALSMV PNSVTIDTTW KQYQWVGEFE ARHDWFGRPG KVKLLAFATR GRMGGYGDAV
NLAQQTGNTP DTGLVRRLAW RPGVALNLEQ EITSDLGVFA RASMNDGSKE TFEFTDINQS
VSAGFSLKGN RWGRPNDTFG AAVVVNGLSR AARQYFAAGG MGVLIGDGAL NYGTERIAEL
YYNWAAIKHL TLGLNYQYVV HPAYNRDRGP VSIVGARVHA EF
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