Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0962 |
Symbol | |
ID | 6289614 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 1018411 |
End bp | 1019223 |
Gene Length | 813 bp |
Protein Length | 270 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642624530 |
Product | TatD-related deoxyribonuclease |
Protein accession | YP_001898542 |
Protein GI | 187928055 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0084] Mg-dependent DNase |
TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00454471 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0309103 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGGATCG ATACCCATTG CCACCTCGAT GCCAGCGACT TTGATGCCGA CCGTGATGCG GTCGTCGCGC AGGCGCATGC AGCGGGTGTC AACCACATCG TCGTGCCGGC GGTGGCACGC TGGAATTTCG ACGCGGTGCG GGCGCTGGCA CATCGGCATG CCGGTTGCAG TTATGCGCTG GGCATCCATC CGATCTACGC CGCGCAGGCC AGTGAAGAGG ACCTCCTCGA GCTGCGCCGC CAAGTCGCCG CGTCAATGGA CGACCCGCGC TTTGTGGCGG TCGGCGAGAT CGGCCTCGAT TTCTTCATTC CCAACTACGA CATTGAACGG CAGAACGCCG TGTTCCGTGC GCAACTGCGC ATCGCTCGCG AATTCGACCT GCCTGTGCTG ATGCACGTGC GCAAGTCGCA AGATCAGGTA CAGAGCGCCG CGGCCAAGGC GGGTGTACGC GGCATTGCGC ATGCGTTCAA CGGCAGCCCG GAACAGGCGC ATCGCTTTGT CGATTCCGGT TTCAAGCTGG GGTTTGGCGG CGTCTTTACC TTTTCGCGCG CCAATCGCGT GCGTCGGCTG GCGCAGGAAT TGCCGATCGA GTCGATCGTG CTGGAAACCG ACGCGCCTGA CCTCGCGCCA GCCTGGCTGG CCGATGATCA ATTCGGGGAG CAGGGCGGTG TGCGCAATGT ACCCACGGAA GTCGCGCGCA TTGCCGATGC GATGGCGCAA CTGCGCGGCA TCTCCATTGA GGCGCTGGCC TACCAGGCGC GCCGCAACAG CATCGACGCC ATTCCCCGCC TGGAAGCGCT CCTGCAAGCC TGA
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Protein sequence | MWIDTHCHLD ASDFDADRDA VVAQAHAAGV NHIVVPAVAR WNFDAVRALA HRHAGCSYAL GIHPIYAAQA SEEDLLELRR QVAASMDDPR FVAVGEIGLD FFIPNYDIER QNAVFRAQLR IAREFDLPVL MHVRKSQDQV QSAAAKAGVR GIAHAFNGSP EQAHRFVDSG FKLGFGGVFT FSRANRVRRL AQELPIESIV LETDAPDLAP AWLADDQFGE QGGVRNVPTE VARIADAMAQ LRGISIEALA YQARRNSIDA IPRLEALLQA
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