Gene Rpic_0923 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0923 
Symbol 
ID6288106 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp976882 
End bp978393 
Gene Length1512 bp 
Protein Length503 aa 
Translation table11 
GC content64% 
IMG OID642624487 
Productprotease Do 
Protein accessionYP_001898505 
Protein GI187928018 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.123789 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGTACCG CTCGATCCAT TTACGCCTTG CGTCTGCTAT GCGTTGCCGC CGCTGTGGCG 
GTTGGGAGCG CGCTGGTGCC GGCCCACGCG CAGAATGCCA CGGGCAGCGT GGCCACGGCC
ACGTATGGCC TGCCCGATTT TGCCGATCTG GTTGAGAAGG TCAGTCCTGC CGTTGTCAAC
ATCCGCACGA CCGAAAAGGT CCGTATGCAG CAGGGTGGTC CGAATGATGA CGACATGGCT
GAATTTTTCC GCCGCTTCTT CGGTGTACCG ATGCCGGGCA TGCCCGGGCA GGGCCAGAAG
CGCCGCAACG CGCCGCCGCA ACAGGAAGAG GAACAGAGCC GCGGCGTTGG TTCCGGCTTC
ATCATCTCGG GCGACGGCTA CATCCTGACC AACGCGCATG TGGTGGAAGG CGCGGAAACC
ATCTACGTCA CGCTGATCGA CAAACGCGAG TACAAAGCCA AGCTGATCGG CCTGGACAAA
CGCACCGATG TGGCCCTCGT CAAGGTCGAA GCGAGTGCTC TGCCGAGCCT GAAGCTGGGC
GATTCCGACA AGGTGCGCGT GGGCGAGTGG GTGCTCGCGA TCGGTTCTCC GTTTGGCCTG
GACAATACGG TTACGGCGGG CATTGTGTCG GCCAAGGGGC GCGATACAGG CGACTATCTG
CCGTTCATTC AATCCGACGT GGCCGTCAAC CCAGGCAACT CGGGCGGCCC GCTGATCAAC
CTGCGCGGCG AGGTGATCGG CATCAACAAC CAGATCTACA GCCAAAGCGG CGGCTACATG
GGCATCTCGT TCTCGATCCC GATCGACGAG GCGATGCGAG TGGCTGAGCA GTTGAAGGCG
ACGGGACGCG TGACACGCGG CCGCATCGGT GTGGCAATCG ACAACGTGCC GAAGGATGCA
GCGGAGTCGC TGGGTCTGGG CCGTGCGCGT GGCGCCTATG TCGGCAATGT CGAATCGGGC
GGTCCGGCGG ACAAGGCAGG CATCGAGGCA GGTGACATCG TCTTGAAGTA CAACGGCCGC
GATGTCGAGA AGGCGGGTGA CCTGCAGCGC CAGGTCGGCG AGACCAAGCC GGGAACGCGC
GCCACCGTGC AGGTCTGGCG CAAGGGCGCA ACGCGCGATC TGGCCGTGAC GGTCGCCGAG
TTGCAGGCCG ACACGAAGGT GGCGCAGCGT ACCAAGGGCG CGCAGCCCGA TAACAGCCAG
CAGGGCCCGG GCAAGCCGAA CGCGCTGGGG CTCGTGGTGG CTGACTTGTC CGACGGCGCG
CGTCGCGAAT TCAAGACCAA GAGTGGCGTT GAAGTGCAGG TCTCTGAAGG GCCGGCGGCG
CGTGTCGGCA TTCGACCGGG CGACCTGATC CTGCGTGTCG GTGATACCGA TGTCACCAAC
GCCAAGCAGT TCAACGAGGT GGTTGCCAAG CTTGATAAGA ACCGCATGGT TGCGGTGTTC
GTCCGCCGTG GCGATGCCAC CCAGGTGGTG ACGCTGCGCC CGAGCGCCGC CCGTTCGGGT
GGTGGTCAGT GA
 
Protein sequence
MCTARSIYAL RLLCVAAAVA VGSALVPAHA QNATGSVATA TYGLPDFADL VEKVSPAVVN 
IRTTEKVRMQ QGGPNDDDMA EFFRRFFGVP MPGMPGQGQK RRNAPPQQEE EQSRGVGSGF
IISGDGYILT NAHVVEGAET IYVTLIDKRE YKAKLIGLDK RTDVALVKVE ASALPSLKLG
DSDKVRVGEW VLAIGSPFGL DNTVTAGIVS AKGRDTGDYL PFIQSDVAVN PGNSGGPLIN
LRGEVIGINN QIYSQSGGYM GISFSIPIDE AMRVAEQLKA TGRVTRGRIG VAIDNVPKDA
AESLGLGRAR GAYVGNVESG GPADKAGIEA GDIVLKYNGR DVEKAGDLQR QVGETKPGTR
ATVQVWRKGA TRDLAVTVAE LQADTKVAQR TKGAQPDNSQ QGPGKPNALG LVVADLSDGA
RREFKTKSGV EVQVSEGPAA RVGIRPGDLI LRVGDTDVTN AKQFNEVVAK LDKNRMVAVF
VRRGDATQVV TLRPSAARSG GGQ