| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0923 |
|---|
| Symbol | |
|---|
| ID | 6288106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 976882 |
|---|
| End bp | 978393 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642624487 |
|---|
| Product | protease Do |
|---|
| Protein accession | YP_001898505 |
|---|
| Protein GI | 187928018 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.123789 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGTACCG CTCGATCCAT TTACGCCTTG CGTCTGCTAT GCGTTGCCGC CGCTGTGGCG
GTTGGGAGCG CGCTGGTGCC GGCCCACGCG CAGAATGCCA CGGGCAGCGT GGCCACGGCC
ACGTATGGCC TGCCCGATTT TGCCGATCTG GTTGAGAAGG TCAGTCCTGC CGTTGTCAAC
ATCCGCACGA CCGAAAAGGT CCGTATGCAG CAGGGTGGTC CGAATGATGA CGACATGGCT
GAATTTTTCC GCCGCTTCTT CGGTGTACCG ATGCCGGGCA TGCCCGGGCA GGGCCAGAAG
CGCCGCAACG CGCCGCCGCA ACAGGAAGAG GAACAGAGCC GCGGCGTTGG TTCCGGCTTC
ATCATCTCGG GCGACGGCTA CATCCTGACC AACGCGCATG TGGTGGAAGG CGCGGAAACC
ATCTACGTCA CGCTGATCGA CAAACGCGAG TACAAAGCCA AGCTGATCGG CCTGGACAAA
CGCACCGATG TGGCCCTCGT CAAGGTCGAA GCGAGTGCTC TGCCGAGCCT GAAGCTGGGC
GATTCCGACA AGGTGCGCGT GGGCGAGTGG GTGCTCGCGA TCGGTTCTCC GTTTGGCCTG
GACAATACGG TTACGGCGGG CATTGTGTCG GCCAAGGGGC GCGATACAGG CGACTATCTG
CCGTTCATTC AATCCGACGT GGCCGTCAAC CCAGGCAACT CGGGCGGCCC GCTGATCAAC
CTGCGCGGCG AGGTGATCGG CATCAACAAC CAGATCTACA GCCAAAGCGG CGGCTACATG
GGCATCTCGT TCTCGATCCC GATCGACGAG GCGATGCGAG TGGCTGAGCA GTTGAAGGCG
ACGGGACGCG TGACACGCGG CCGCATCGGT GTGGCAATCG ACAACGTGCC GAAGGATGCA
GCGGAGTCGC TGGGTCTGGG CCGTGCGCGT GGCGCCTATG TCGGCAATGT CGAATCGGGC
GGTCCGGCGG ACAAGGCAGG CATCGAGGCA GGTGACATCG TCTTGAAGTA CAACGGCCGC
GATGTCGAGA AGGCGGGTGA CCTGCAGCGC CAGGTCGGCG AGACCAAGCC GGGAACGCGC
GCCACCGTGC AGGTCTGGCG CAAGGGCGCA ACGCGCGATC TGGCCGTGAC GGTCGCCGAG
TTGCAGGCCG ACACGAAGGT GGCGCAGCGT ACCAAGGGCG CGCAGCCCGA TAACAGCCAG
CAGGGCCCGG GCAAGCCGAA CGCGCTGGGG CTCGTGGTGG CTGACTTGTC CGACGGCGCG
CGTCGCGAAT TCAAGACCAA GAGTGGCGTT GAAGTGCAGG TCTCTGAAGG GCCGGCGGCG
CGTGTCGGCA TTCGACCGGG CGACCTGATC CTGCGTGTCG GTGATACCGA TGTCACCAAC
GCCAAGCAGT TCAACGAGGT GGTTGCCAAG CTTGATAAGA ACCGCATGGT TGCGGTGTTC
GTCCGCCGTG GCGATGCCAC CCAGGTGGTG ACGCTGCGCC CGAGCGCCGC CCGTTCGGGT
GGTGGTCAGT GA
|
|---|
| Protein sequence | MCTARSIYAL RLLCVAAAVA VGSALVPAHA QNATGSVATA TYGLPDFADL VEKVSPAVVN
IRTTEKVRMQ QGGPNDDDMA EFFRRFFGVP MPGMPGQGQK RRNAPPQQEE EQSRGVGSGF
IISGDGYILT NAHVVEGAET IYVTLIDKRE YKAKLIGLDK RTDVALVKVE ASALPSLKLG
DSDKVRVGEW VLAIGSPFGL DNTVTAGIVS AKGRDTGDYL PFIQSDVAVN PGNSGGPLIN
LRGEVIGINN QIYSQSGGYM GISFSIPIDE AMRVAEQLKA TGRVTRGRIG VAIDNVPKDA
AESLGLGRAR GAYVGNVESG GPADKAGIEA GDIVLKYNGR DVEKAGDLQR QVGETKPGTR
ATVQVWRKGA TRDLAVTVAE LQADTKVAQR TKGAQPDNSQ QGPGKPNALG LVVADLSDGA
RREFKTKSGV EVQVSEGPAA RVGIRPGDLI LRVGDTDVTN AKQFNEVVAK LDKNRMVAVF
VRRGDATQVV TLRPSAARSG GGQ
|
|---|
| |