Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0779 |
Symbol | rpsA |
ID | 6286818 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 825213 |
End bp | 826901 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 642624343 |
Product | 30S ribosomal protein S1 |
Protein accession | YP_001898362 |
Protein GI | 187927875 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0110313 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCAAA CTAACGAATC TTTTGCCGCC CTGTTCGAAG AGTCGATCGC CAAGTCCAAT ATGAAGGCTG GCGAAGTGAT CTCTGCGGAA GTTGTGCGTA TTGACCACAA CTTCGTCGTT GTGAACGCGG GCCTGAAGTC TGAAGCTTTT GTTCCGGTCG AAGAGTTCCT GAACGATCAG GGCGAGCTGG AAGTGCAAGT CGGCGACTAC GTTTCGGTCG CAATCGACGC GCTGGAAAAC GGCTACGGCG ACACCATCCT GTCGCGCGAC AAGGCCAAGC GTCTGGCTTC GTGGCTGAAC CTTGAGAAGG CACTGGAATC CGGCGAGATC ATCTCCGGTA CCGTGACCGG CAAGGTCAAG GGCGGCCTGA CCGTCATGGT CAACGGTATT CGTGCATTCC TGCCGGGTTC GCTCGTCGAC GTGCGTCCGA TCAAGGACAC CACGCCGTAC GAAGGCAAGA CCCTCGAATT CAAGGTCATC AAGCTGGACC GCAAGCGCAA CAACGTTGTG CTGTCGCGCC GTGCCGTGGT TGAAGCCACG CTGGGCGAAG AGCGTCAGAA GCTGATGGAA ACGCTCAAGG AAGGTGCGAT CGTCAACGGT ATCGTCAAGA ACATCACCGA CTACGGCGCG TTCGTGGATC TGGGTGGCAT CGACGGTCTG CTGCACATCA CCGACCTGGC ATGGCGTCGT GTCCGTCACC CGAGCGAAGT GCTGTCGGTT GGCCAGGAAA TCACCGCCAA GATCCTCAAG TTCGACCAAG AGAAGAACCG CGTCTCGCTG GGCGTCAAGC AGTTGGGCGA AGATCCGTGG GTCGGCATCT CGCGCCGCTA CCCGCAAGGC ACCCGCCTGT TCGGCAAGGT CACCAACCTG ACCGACTACG GCGCGTTTGT AGAGATCGAA GCCGGTATCG AAGGCCTGGT CCACGTGTCG GAAATGGACT GGACGAACAA GAACGTGGCC CCGTCGAAGG TTGTCCAGCT GGGCGACGAA GTGGAAGTCA TGGTTCTGGA TATCGACGAA GACAAACGTC GTATCAGCCT GGGCATGAAG CAGTGCAAGG CCAACCCGTG GGACGATTTC GCACGCAACC AGAAGAAGGG CGACAAGCTG GCTGGCCAGA TCAAGTCGAT CACCGACTTC GGCGTGTTCA TCGGTCTGCC GGGCGGCATC GACGGCCTGG TGCACCTGTC GGACCTGTCG TGGCAAGAGA CTGGCGAAGA AGCCGTTCGC AAGTACAAGA AGGGCGACGA AGTGGAAGCC GTTGTGCTGG CCATCGATGT CGACAAGGAA CGCATCTCGC TGGGTATCAA GCAACTGTCG GGCGATCCGT TCAACAACTT CATCTCGACC AACGACAAGG GTTCGATCGT GCAGGTCACG ATCAAGGCCG TTGATCCGAA GGGTGCCGTG GTGCAGCTGG CTGACGACGT GGAAGGCTAC CTGCGCGCCT CGGAAATCTC GAGCGACCGC GTGGAAGATG CCCGCAACGT GCTGAAGGAA GGCGAAACGA TGACCGCGAT GATCGTCAAC ATCGATCGTA AGTCGCGCAA CATCAACGTC TCCATCAAGG CGAAGGACAG CGCCGACCAA CAGGAAGCGA TGCAGAAGTT CTCGGCGGAT ACCGGCGCAG CTGGTACCAC GAATCTCGGC GCGCTGCTGA AGGCCAAGCT GAACGAGACC AACCAGTAA
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Protein sequence | MSQTNESFAA LFEESIAKSN MKAGEVISAE VVRIDHNFVV VNAGLKSEAF VPVEEFLNDQ GELEVQVGDY VSVAIDALEN GYGDTILSRD KAKRLASWLN LEKALESGEI ISGTVTGKVK GGLTVMVNGI RAFLPGSLVD VRPIKDTTPY EGKTLEFKVI KLDRKRNNVV LSRRAVVEAT LGEERQKLME TLKEGAIVNG IVKNITDYGA FVDLGGIDGL LHITDLAWRR VRHPSEVLSV GQEITAKILK FDQEKNRVSL GVKQLGEDPW VGISRRYPQG TRLFGKVTNL TDYGAFVEIE AGIEGLVHVS EMDWTNKNVA PSKVVQLGDE VEVMVLDIDE DKRRISLGMK QCKANPWDDF ARNQKKGDKL AGQIKSITDF GVFIGLPGGI DGLVHLSDLS WQETGEEAVR KYKKGDEVEA VVLAIDVDKE RISLGIKQLS GDPFNNFIST NDKGSIVQVT IKAVDPKGAV VQLADDVEGY LRASEISSDR VEDARNVLKE GETMTAMIVN IDRKSRNINV SIKAKDSADQ QEAMQKFSAD TGAAGTTNLG ALLKAKLNET NQ
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