| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0708 |
|---|
| Symbol | |
|---|
| ID | 6288350 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 744215 |
|---|
| End bp | 745051 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642624271 |
|---|
| Product | tryptophan 2,3-dioxygenase |
|---|
| Protein accession | YP_001898291 |
|---|
| Protein GI | 187927804 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3483] Tryptophan 2,3-dioxygenase (vermilion) |
|---|
| TIGRFAM ID | [TIGR03036] tryptophan 2,3-dioxygenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0517203 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCCG CCCAGGGCGA GGGCTGGCAC GACGCACAGC TCGATTTCTC GAAGTCGATG
AGCTATGGCG ACTACCTCGC GCTCGACCAG ATCCTGAACG CGCAGCACCC GCGCTCGCCG
GATCACAACG AGATGCTCTT CATCGTTCAG CATCAGACCA CCGAGCTGTG GATGAAGCTG
ATGCTGCACG AGTTGCGCGC CGCGCGGGAT TGCGTGCGCA ATGACAACCT GCCGCCTGCG
TTCAAGATGC TGGCGCGCGT GTCGCGCATC ATGGATCAGC TGGTGCAGGC GTGGAACGTG
CTCGCCACTA TGACGCCGCC GGAGTACTCG GCCATGCGTC CGCACCTCGG GCAATCGTCA
GGCTTTCAGT CGTATCAGTA CCGCGAGATC GAGTTCATCC TCGGCAACAA GAACGCGGCG
ATGCTCAAGC CGCACGCGCA TCGCACCGAG CATTACGAAC AGGTCAAGGC TGCGTTGGAA
ACGCCGTCGC TGTACGACGA GGCGGTGCGT TACATGGCGC GTCACGGCTT TGCATTCGAC
GCAGATTGCA TCGAGCGTGA CTGGTCGCGT CCCGTGACTT ACAACGCCTC GGTGGAAGCG
GCGTGGCTGG AGGTCTATCG AGACCCGACG CACCACTGGG AGCTGTACGA GCTGGCTGAG
AAGTTCGTCG ATCTGGAAGA TGCGTTCCGG CAATGGCGCT TCCGGCATGT GACCACGGTC
GAGCGCGTGA TTGGCTTCAA GCGTGGCACG GGCGGCACCG AGGGCGTCGG TTACCTGCGG
AAGATGCTGG ATGTGGTGTT GTTTCCGGAG CTTTGGAAGT TGCGGACTGA TCTTTGA
|
|---|
| Protein sequence | MQAAQGEGWH DAQLDFSKSM SYGDYLALDQ ILNAQHPRSP DHNEMLFIVQ HQTTELWMKL
MLHELRAARD CVRNDNLPPA FKMLARVSRI MDQLVQAWNV LATMTPPEYS AMRPHLGQSS
GFQSYQYREI EFILGNKNAA MLKPHAHRTE HYEQVKAALE TPSLYDEAVR YMARHGFAFD
ADCIERDWSR PVTYNASVEA AWLEVYRDPT HHWELYELAE KFVDLEDAFR QWRFRHVTTV
ERVIGFKRGT GGTEGVGYLR KMLDVVLFPE LWKLRTDL
|
|---|
| |