| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0679 |
|---|
| Symbol | |
|---|
| ID | 6287641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 718596 |
|---|
| End bp | 719348 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642624241 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001898262 |
|---|
| Protein GI | 187927775 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.22723 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.897045 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGTAT TCGTGACCGG CGCAACCGCC GGGTTCGGCG CGGCCATCGC GCGGCGTTTC
GTACAAGAAG GCCATCGTGT GATCGCGGCA GGGCGCCGCC AGGACCGTCT TGATGCGCTC
AAGGCCGAGT TGGGCGACGC GGTGCTGCCG TTCGTGCTGG ATGTGCTGGA CGTCGATGCC
GTTGCTGCCT TGCCGGGCAC CCTGCCCGAG GGCTGGCGCG AAGTCGACGT GCTCGTCAAC
AACGCCGGTC TGGCTCTCGG CCTTGAACCT GCCCAGCGCG CTGACCTGAC CGATTGGGAC
CGCATGATCG GCACCAACTG CTCCGGGCTG GTTCATATGA CGCGTGCGTT ACTTCCGGCC
ATGGTCGAGC GCAATCGCGG ACACATCATC AATATCGGCT CGATTGCGGG GACGTACCCA
TACCCGGGCG GCAACGTGTA CGGCGCCACC AAGGCGTTCG TCCGCCAGTT CTCGTTGAAC
TTGCGCGCGG ACTTGACTGG TACCCGCGTC CGCGTATCGA ACGTTGAGCC AGGTCTTTGC
TCCGGCACCG AGTTTTCCAA CGTCCGTTTC AAGGGGGACG ATGCCCGCGT AGAGAAGGTC
TACGAAGGCA CGGAAGCGCT GACGGCAGAC GATATTGCCG AGGCGGTCTA CTGGATGGCG
GCGCTTCCCG CGCACTTCAA TGTCAACGCG ATGGAGCTGA TGCCCGTTTG CCAGTCATTC
TCGGCCACCA GCGTGACGCG AGGCATGGCC TGA
|
|---|
| Protein sequence | MIVFVTGATA GFGAAIARRF VQEGHRVIAA GRRQDRLDAL KAELGDAVLP FVLDVLDVDA
VAALPGTLPE GWREVDVLVN NAGLALGLEP AQRADLTDWD RMIGTNCSGL VHMTRALLPA
MVERNRGHII NIGSIAGTYP YPGGNVYGAT KAFVRQFSLN LRADLTGTRV RVSNVEPGLC
SGTEFSNVRF KGDDARVEKV YEGTEALTAD DIAEAVYWMA ALPAHFNVNA MELMPVCQSF
SATSVTRGMA
|
|---|
| |