| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0674 |
|---|
| Symbol | |
|---|
| ID | 6287379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 712134 |
|---|
| End bp | 715502 |
|---|
| Gene Length | 3369 bp |
|---|
| Protein Length | 1122 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642624236 |
|---|
| Product | Tfp pilus assembly protein tip-associated adhesin PilY1-like protein |
|---|
| Protein accession | YP_001898257 |
|---|
| Protein GI | 187927770 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.920198 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAC AATCTTTCTT AGTCAAGGCG CTCGCGCTGT TGATCAGCTC GCTGCTGCCG
CTGACAACTA ACGCGGCGCT GCTCACCATC GCGCAATATC CGCTGTTTCT GTCGAGCAAC
ACAGCCACCC CCAATATTTT GGTGGTCTAT GACAACTCGC AGTCCATGGA CGGGACGATG
ACGGGCAAGT TGATCGCGGG CAACGATCCG ACCACACGTG GCAACATTGC GCGCTCGGTG
ATTACGTCGA CCATCTCGAA CTATCGCACC CAATTCAACT GGGGCCTAGC GACGTTCGAT
GCACCGGGGC CCAGCCTGTA CAACACGTAT GCCTACTTCT TTGGGAGCGC CAGCACCATG
GTGTTCACAA ATGACTGTGT CAACGGCATT TCCGCATCGA ACGGCGGCCT GCGCTGCGTC
CCGAATCCGC AATCGGGTGC CTCGTATTCG TATTTGACTT ACGAGCTCAG TGGCGATGAT
CCTGCCATCA ATGACGTCTT GTACTACAAC GGTACGTGGC CGTATCCGTG GGCTATTGGC
TTATCGGGGG GGACGACCAG CAATCCCAAT ACCAATTACA ACGGGTGCCA GAACCACGCC
AACGTGTCGA CCTGGAATTC CGGTGACTTC TCGGGTTGCC AGCAAGTTGG CTTTACCCCG
ACCGACGCCG GGTTTCTGCC GGGCAATCCT CCTTACTCAC GAATGATCTG GCTATCGCGT
GCGTGGGGCT ACTATGCCAA CATAAGCGGG TCCGGCAAAA TGCTGGAAGC TGTGCAGGCG
GATTCGCCCT CGCACTACCA GAATCTGATC GATTATCTGG CGCCGGAGAC AAACTCAAAT
TCAGCAGCGA GCGGCCACAG CAAGCTCGAA ATCAAGAACG GGGCGGTGGC TACACCTCTC
TCTGGCAGTC TGCAAACGGC GAGGAGTTAC TTCGCGGGCT CGCAGACTGG CTATTCGACG
CCTGTGACTC AAAGTTGCCA GAAGAACTTT GTGCTGTTAG CGACCGATGG CAACCCCACC
GGCAAGACCG ATGGTTCGAT GTGGGCGCTT TCCGATCAGC AAAGCACCTA TAACTCGAGC
ACTGGACAGT GGACGTTCTC CAACGCTGCG AACGATGTGT TCAGTCAAAT CACGGCGTTA
CGCAGTACGA GCGTTAAGGG TTATACGAGT CCCTTTGACA TTCAGACCTA CGTGGTCGGG
ATGGGTAGCA CGGTGTCCAA CCCCGCTTCG GTAGCTGCGC TCAACCAAAT GGCAAAGCTC
GGGGGGACGG GCAATGCTTA CCTGAGCACG GATCCCGCAA CGCTGCAGCA GCAGTTCCAA
AGCATCGCGG CGGACATTAC CACCAAGGTG GCAGCGGCTT CGGCCGTTTC CCTGAACGCG
GGTTCCTGGG GGACAGGCAC TGCCTTGTAT CAGGCCAAGT TCAGCAGCGC CGACTGGTCG
GGGCAGTTGC TTGCATATGC TATTAACTCG GACGGTTCGA TCGGCAGCCA ACTCTGGGAT
GCCGGCCAGC AGATCAATTC CCAGAACTGG GATACCGGGC GCCAGATCCT GACGTACAAG
CCGTCTGCGG CTCTTGGCGC TCGCGGTATT CCGTTCCGGT GGCCTGTATC GCCGGGTTCG
CCGAAGGCGA CCGAGATGGA CGCGGCGCAA TCGACCAAGC TGAACTACAA CGCCAGCCAG
ACCACCAACG ATGGCTATGG CTCGCAGCGT GTGACCTATC TGCGTGGCAA CAATGCCAAC
GAAGCCAATA CGTGTGGGTC CTGCACACCT TCGTTTCGCA ATCGTCCGAC GAGCAAGCTG
GGCGACATCA TTCACTCATC GCCGAACTAT GTCGGCGCGC CTGCGTTCAA CTATCCAGAC
AACATGGAGA GCGCCCCTTA CTCCGCATTC GTATCGACTT GGCGCAATCG AACGCCGATG
ATCTACGTCG GAGCCAATGA CGGCATGCTG CACGGCATCA ATGCGTCTAC GGGGAAAGAG
TCGATGGCCT ATGTTCCGGC GGCCATCTAC AGCAACCTCA GTATGCTGAC CGCTCCGACC
TACACACACC AGTACTTCGC GGACGGCTCC GTCACGGTGG GGGACACCTT CTATAAGAGC
GGGTGGCATA CGTTGCTGTC AGGCGCGCTG GCCGGTGGAG GACAGGGCAT TTTCGCGCTC
GACGTCACCG ATCCGTCGAA GTTCACCGAG TCGACTGCGA GCCAGGTCGC GCGCTGGGAA
TTCACCGACG CGAATGACGC AGACATGGGC TATAGCTTTG GCCAACCGTT GATCGTCAAA
ACAAACAACG GAAGGTGGTC CGTTATTGTG GCCAATGGTT ACAACAGCAC GCAGTCTGAT
GGTGCGGCGA GCACGACCGG CCACGCAGTG CTGTTTGTGT TGGATGCAGA AACCGGAGCG
GTCACTGCAA AGATTGATAC GAACGCTGGC ACTACTGCTG CGCCAAATGG CCTGTCAGGA
CCTGTCGCCG TTGATACCAA CGGGGATGGC ATTGCCGACG TTGTTTATGC CGGCGATCTG
GCGGGCAACA TGTGGAAGTT CGACCTGTCG AGCAGCACGG TCAGCAATTG GGGGGTTGCA
TTTGGTACCT CCGGCAGTCC GCAGCCGTTG TTCAGTACGG GGGGGCAGCC GATTACGGTA
CGCCCGGACG TGACTCGAAA TTTGCAAGGT AACTACCTCC TGGTCTTCGG CACGGGGCAG
TACTTCACAA CGACCGATAC AGCGTCGACG GCTGGACAGA CCTTCTACGG CATCATCGAC
AAGGGCGCCA CGATCAGCGG CCTGTCTAAT CTTCAGCAGC AATCGGTGTT GGGCACAACA
ACGGGTCCCG ACGGCAACAC GTATCGCATC ACGACACACG CCGTAGGAGC GCCAACCTTG
GACGCGCTTC GGTCCGGCGA CAATGCAATT TCACTTGGGT CCTACAACAG CTCGAAGCTC
GGTTGGTACA TCAACTTGCC GACTACCGGA GAGCGTGCTG TGACAGATGC GACCATTCGT
TCGGGTCGTG TGATTTTTAA CACTGTCATC CCGTCCACCG CCCAATGCAG CGCCGGGGGT
ACCGGCTGGG TGATGGAGCT GGATGTCTTT ACGGGCAACC GTTTGGATAG TCCGACCTTC
GATACCAATG GCGACGGAGT CATCAACAAC TCGGATCTAC TCCAATATGG CGGTTCGCCC
GCCAATACGA GTGGTCGACA AGTCGGCTCA ATTCCGGCTG CTCCGGGCTT TTTGCAGCCC
ATCCAAGCAC CGGGCGCCTC GCCATTTGAA AACAAATACG TCAATACTTC GGCGGGTGCC
ATTCAAGTGA TTGGTGAAAC GGCAGGTAAG GGTTCCCGTG GCCGTGTTGC ATGGCGGCAA
TTGAACTGA
|
|---|
| Protein sequence | MKTQSFLVKA LALLISSLLP LTTNAALLTI AQYPLFLSSN TATPNILVVY DNSQSMDGTM
TGKLIAGNDP TTRGNIARSV ITSTISNYRT QFNWGLATFD APGPSLYNTY AYFFGSASTM
VFTNDCVNGI SASNGGLRCV PNPQSGASYS YLTYELSGDD PAINDVLYYN GTWPYPWAIG
LSGGTTSNPN TNYNGCQNHA NVSTWNSGDF SGCQQVGFTP TDAGFLPGNP PYSRMIWLSR
AWGYYANISG SGKMLEAVQA DSPSHYQNLI DYLAPETNSN SAASGHSKLE IKNGAVATPL
SGSLQTARSY FAGSQTGYST PVTQSCQKNF VLLATDGNPT GKTDGSMWAL SDQQSTYNSS
TGQWTFSNAA NDVFSQITAL RSTSVKGYTS PFDIQTYVVG MGSTVSNPAS VAALNQMAKL
GGTGNAYLST DPATLQQQFQ SIAADITTKV AAASAVSLNA GSWGTGTALY QAKFSSADWS
GQLLAYAINS DGSIGSQLWD AGQQINSQNW DTGRQILTYK PSAALGARGI PFRWPVSPGS
PKATEMDAAQ STKLNYNASQ TTNDGYGSQR VTYLRGNNAN EANTCGSCTP SFRNRPTSKL
GDIIHSSPNY VGAPAFNYPD NMESAPYSAF VSTWRNRTPM IYVGANDGML HGINASTGKE
SMAYVPAAIY SNLSMLTAPT YTHQYFADGS VTVGDTFYKS GWHTLLSGAL AGGGQGIFAL
DVTDPSKFTE STASQVARWE FTDANDADMG YSFGQPLIVK TNNGRWSVIV ANGYNSTQSD
GAASTTGHAV LFVLDAETGA VTAKIDTNAG TTAAPNGLSG PVAVDTNGDG IADVVYAGDL
AGNMWKFDLS SSTVSNWGVA FGTSGSPQPL FSTGGQPITV RPDVTRNLQG NYLLVFGTGQ
YFTTTDTAST AGQTFYGIID KGATISGLSN LQQQSVLGTT TGPDGNTYRI TTHAVGAPTL
DALRSGDNAI SLGSYNSSKL GWYINLPTTG ERAVTDATIR SGRVIFNTVI PSTAQCSAGG
TGWVMELDVF TGNRLDSPTF DTNGDGVINN SDLLQYGGSP ANTSGRQVGS IPAAPGFLQP
IQAPGASPFE NKYVNTSAGA IQVIGETAGK GSRGRVAWRQ LN
|
|---|
| |