Gene Rpic_0643 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0643 
Symbol 
ID6286470 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp683000 
End bp684316 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content67% 
IMG OID642624204 
Product3-deoxy-D-manno-octulosonic-acid transferase 
Protein accessionYP_001898226 
Protein GI187927739 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1519] 3-deoxy-D-manno-octulosonic-acid transferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.240114 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCGCG TTCTATATCG CTGGTTGTGG CGCATTGCGC TGCCGTTCGC ATTGCTGCGC 
CTGTGGTGGC GCGGCCGCAA GGAGCCCGGT TATCGACAGC ATGTCGGCGA GCGGCTTGGC
TTCTATCCGC CGCGCCCGAA TCCTGACCGT CCGTTGCTGT GGGTGCACGC CGTGTCCGTT
GGCGAGACGC GCGCCGCGCA GCCGCTGATT GATGCCCTGT TGGCGCGCTT TCCGCACCAC
GCTGTCCTGC TGACGCACAT GACGCCGACG GGCCGCCGCA CGGGCGCTCA ATTCGCGGCA
CAACGCAACC GCCGCGTCAT CCAGGCGTAT CTTCCGTACG ATTTGCCGAG CGCAGTCGAT
CGGTTTCTGC GGCATTTCCA ACCGCGCCTT GGCCTGCTGA TGGAGACCGA GATCTGGCCG
GTGCTGATCG AGCGCGCCTA TACGGCCGGT GTGCCGATGG TGCTCGTCAA CGGGCGCCTG
TCTGCGCGCA GTCACCGGCG TACCGCGCGC CTGGGTGACG CGGCGCGCCA GACGTACGCG
CAGCTCGCCG CCGTGCTGGC CCAGACGCCC GACGACGCCG ATCGCTACCG CTCGCTCGGC
GTGCCGCGCG TGCGGGTGAC CGGCAACCTG AAGTTCGACA TCACGCCGCA TGTGGACCAG
ATCATGGCCG GACGTGCGTT GCACGACGCG CTACGTGGCC GATCGGTATG GGTGGCCGCC
AGCACGCGCG AGGGCGAAGA AGCGTTGCTG CTTGACGCGT GGCAGGCGCA TCGCGCGCAG
CATGTCGGGC GCCGGCATGC GTTGCTGATT CTTGTGCCGC GTCACCCGCA GCGTTTTGAT
GAAGTGGCCC AGGCTGCCGA ACGCGCGGGC TTGCGTGTCG TGCGTCGCAG TGCGTTGTCG
GTGTCTGCAG CAGGCGTGAC GGAGTCCGAT CAACTTGCCG ACGCCGACGT TTTGCTCGGG
GACTCGATGG GCGAGATGGC ACTGTATTAC GCGGCTGGCG AAGTGGCGTT CATCGGCGGC
AGCCTGCTTC CGCTCGGGGG GCAGAATTTG ATCGAGGCCT GCGCGGTCGG CACACCCGTG
GTCATCGGCC CGCATACCTT TAACTTCGCG CAGGCGACTC GCGATGCAGT TGCCGCGGGT
GCGTGCGAGC AGGTAGGAGA TGCCGCTGCG GCGATACGTG TGATCGACGC GTGGCTGTCC
GATGCCGATG CGCGCGAAGC CGCATCACGT GCCGCGCTGG CGTTTGCCGC CACACACGGC
GGTGCGACGG CGCGCACGGT GGAAGCGGTG GCATCCCTGG TCTTGCCAAC GCTGTAA
 
Protein sequence
MLRVLYRWLW RIALPFALLR LWWRGRKEPG YRQHVGERLG FYPPRPNPDR PLLWVHAVSV 
GETRAAQPLI DALLARFPHH AVLLTHMTPT GRRTGAQFAA QRNRRVIQAY LPYDLPSAVD
RFLRHFQPRL GLLMETEIWP VLIERAYTAG VPMVLVNGRL SARSHRRTAR LGDAARQTYA
QLAAVLAQTP DDADRYRSLG VPRVRVTGNL KFDITPHVDQ IMAGRALHDA LRGRSVWVAA
STREGEEALL LDAWQAHRAQ HVGRRHALLI LVPRHPQRFD EVAQAAERAG LRVVRRSALS
VSAAGVTESD QLADADVLLG DSMGEMALYY AAGEVAFIGG SLLPLGGQNL IEACAVGTPV
VIGPHTFNFA QATRDAVAAG ACEQVGDAAA AIRVIDAWLS DADAREAASR AALAFAATHG
GATARTVEAV ASLVLPTL