Gene Rpic_0616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0616 
Symbol 
ID6287120 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp652126 
End bp658155 
Gene Length6030 bp 
Protein Length2009 aa 
Translation table11 
GC content68% 
IMG OID642624177 
ProductCheA signal transduction histidine kinase 
Protein accessionYP_001898199 
Protein GI187927712 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0643] Chemotaxis protein histidine kinase and related kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCATC AATCTTCCGC CCAGCCCGAA TCCGCCTCTG TCGAGGCGGT GGGAGCCCCA 
GCCGGGCGTC AGAAATCCGG CCCCAAGCCT GCCGTGCCCG CGCGTGATCT CTCCGCGCTG
GCGTGGGTCG CGCCCAACAT GCGCGCTGCG CTGGACGATG CCGTGCGCGA GTTCGGCGAA
TACGCGGCCG ATGTCATCGC CGATCCGGAG GTCATCGGTG CGCGCGATAC GACGTCGCTG
CGCCTAGCCG GCCAGTATCT GCACCAGGCT GCCGGCGCGC TGCTGATCGT GGGTCTGCGC
GGTGTCGACG TGTATTGCCA AGCCGCCAAG CGCCTGCTCG AGGCGGTGGA TGCCGGCAGC
GTCGCCGCCG ACGCCCAAAC GCTGGACGTG TTCTCGCGCG CCGTGCAGGC GTTGCAGGAA
TACGTTTCCG ACCTCATGGC TGGCATGGCC GAAGAGCCGC TGCGCCTGTT CCAGCCGTAT
CAAGCCGTGC TGTCCCGCCT GGGCGAAGAG CGCATCCACC CGGCTGACCT GTGGGCCGAT
GAGCTGCGCC ACCTGCCGGC GCTGCTGCTG CCCTCGCGCG ATTTGCCGGG GCTGGCGCGC
CTGCGCCGCA AGTTCGAATT GGCGTTGCTG ACCGCGCTGC GTGCGCCTGC CTCGAACGCC
GATGGTGCGG TGGTGGATCC GTCGGCCGCG GCAGCGGCCT ACGCGCCGCT GGAAGACCTG
CTGCATGGCA TCCGTGCGCT GGAGCGCGAA CCGCGCCGCG CCGGGGACGA TCTGCAGCGC
GATCTGTGGC TCGTGCTGGC CCTGACATTT GGCGCCCTGC GTGCGGGCCT GGTGCCGGCC
GACATGACCG CCAAGCGCCT GGCCGCACGC GTCAACCTGC TGCTGCGCCA GTACTCGCAC
AACAACGTCC ACTTGCCGCA AGGCCTGCTG ACCGACGCGC TGTATTTGCT GGCCGGCATG
GCGTACAGCA ACGCACCGGC AGTGCCGGTT GGCGACGACA CGCTTGGCCC GGATATCGTG
GCCTGCGTGC AGGCCTTCGC GATTCCGCCC ACGCACGCGC CCGCTGGCGC ACTGCACACG
CGTCAGTACT ACGCACTGCT GCCGACCGAC GCCAGCGACA CGCTGCAACG CGTCGGCCGC
TCGCTCGAAA CGCTCAGTCA ACAACCTGCA CCCGCGGCGG ACGAACTCGA TGCTGCACTG
CAGACCCTTG CGCTGCATGC CGATGCGCTG GGGCAGCCGG CCCTGTCCGA CCTGTCGAAC
CGTCTGACCG AAGCTGCCGG GCAGGACGTT GCGCCCACGC TGCAATTCCT CTCGCGCATG
CTGGCCCGCC CGTGGGCGGT GCATGGCGAA TCCGGCGACT TGCGCAGCGC GTGGTTTGCC
GCCCGCTGCA GCGAACTGGC CGAACACGCC CGCGCGACGC AAGACGGTCA CGCCGTGCCG
GCTCCCGCAT GGCTCACGCT CCTGGCCGAA GAAGCTGCAC AACGCCGCGC GCATGCCGAG
CAGGTTCGCG CGCTGCAAAC GTTGCTGGCC TCTGCCGAAA CGCACCTCGA TGCGTTCGAG
CGCGAAGGCG TGGAAAGCGG CGGCCTGCAG GAAGCCGCCC GCCTGTTCGG CGAGATGCAA
ACTGCCTTTG CCGCGCTCGA CGCCTATGAG GCAGTGCACG CCACCGAAGC TGCCCAATCG
ACCATCAACG CGCTGCAAGC CGCGGGCGAG GGCGCAACTG CCGATCGTGA GCGCTACCTG
GCTGCGCTGG CTGCCAACGT CAGCGGTCTG CAGGCCTTGC TTGATGCGTT GTCTGCCGGC
ACAGAACTGG CCGGCGGCCA AGTCGACGAG ATCGTCATTG AAGGCCAGCT GACGCCCACC
GAGCGCGAAA CCGCATGGCG CGAGTTCGCC TTCGATACCG AATCCGGCAT GCTGGCCCGC
CGCGAGCCGC AATCCGAAAC GCTCGTCGGC GCAGACATCG CCAATGCCGA TGCCGCGTCG
CCGCTGCAAT CGTTGCTTGA TCGCCTGCTG GCCAAGCAAC CGGTCGACCC GTCCGACCCG
CTGGCTGCGG AGCTGCGCAC TGCGCTGCAG GAAGCGCGCG ATGCCGCCGC CATCGACGAC
GATCCGGCTC GCCGACGCCG CCTGGAAGAG GCGCTGGCCC AGTTCGATGC ATGGCAGGTT
GGCAGCCCCG GCGCGCTTGA GCGGATGCAG GCCGCATTGG CGGCACCGGT TGCTGCGCCT
GCGGCCGCCG CGCCTGCGCC AACTGCCGCA CGGGATACCC AATCCATCGA CGCCGAGCTG
CTCGACATCT TCCTGTCTGA AGCCGAAGAA GTGCTGGCCG GCGTGCGCGC CGACCTGCAG
GGTCTGCAGG CCGCTGCCGA CATGGGCACG GGCGGTCTGG CTGCCGGTTC GGACCTGGAC
TTGCTTACGC AGTTGCGCCG CGCGTTCCAC ACGCTCAAGG GCTCGGGCCG CATGGTCGGG
CTCACGCGCT ATGGCGAGGC GGCCTGGGCC ATCGAGCAGG TGATGAATGT CTGGCTGGCC
GAGAACCGTG TGCCGACGCA TGACCTGGCC GCGCTCCTGA CGCGCGCCGA GTCCGAGTTG
TCAACGTGGG CCGCTGCCAT CGCGCAATCG CCCCAAGCCG ATCACGCGAT TGAACCGCTG
GTCGCCGCCG CAGAGCGCGT GCGCCATGGT GGTCCGTTCG TGTGGCTGGA GGCCGTGCCC
GAAACGCAGG CCGCTCCCGA ACACGCTGAG CCGCAAGTGC CCGAAGCACC GGCTGCGGAA
CCCGCATTGC ACGACATCGA CGCGATGCAG CCGATGGAGT TGACTGCACC GGATGTGCCC
GTTGCAGAAG CCGAAGAAGC CGTCGCGCTC CAGTGGGAAG ACGAACCTGC GCTGCCCGAC
GTCGAGGCGC CGATGCCCGA GGCGACCGCA CCGCTGGTCG AGCATGAGGC AGTCGAGCCG
GCTGCAGAGC ACGTCGAAGA GACGATTCAG GACGCTGCCG CTGAACCGGT TGCCGCCGAT
GCCGACGCCA AGGTGATCCC GTTCCCGTTC GCGCAGACCG GCGAGCTGGA GGAAGCACCG
CACGACGACG GCGTGAAGGA GATTGGTCCG GTCCGCATCA GCGTGGCGCT GTACAACGTC
TACCTGCAGG AAGCCGATGA TCTGATCCGC CGGCTCGGCG TGGATTTCTC GGAGTGGCGC
CACGAAGGCC GCACGCCGCC GAGCGAGCTG GCCCTGCGCG CCGCGCACAC GCTGCAAGGC
AGTTCCGCCG TGGTTGAGCT GGAGCCCGTG CGCCAGTTGG CTGGGGCGCT GGAGCAGGTG
CTGCTGAATC TGAACAGTCG CCCGGTGGCG ATGCATCCGG GCGACTTCCG CCTGCTCGAT
CAATCCATCG AGCGCATGCG CGGCATGCTG CATCAATTTG CCGCCAGCCT CTGGCCCGAC
GCCGACGAGC CACTGCGCCG CAGCCTGGAC GAGCTGTGCG AGCGCCTGCT CGTGCGTCCG
CGCCTGCCGC TGGAGCCGGC GCCCACTGCC TTTACCGAAG CCGAACAGGC CGAGAACGAA
ACCCCCAGCC AGGCTGGCGA GCCCGAGTTT GAGCCGGCAC AGGTTGCGCC GACGTTCGTG
CCCGTACACG AGTCGCCCGT TGCCGAGCCG GCCGTCGGTG AGCTGGTTCG CCAGGCACCG
GCCGACGCGC TCGACCCGGC GCTGCTGGAA ATCTTCCTGG AGGAAGCGCA CGTCGCGCTG
CCTGAACTGG GCCAGCACCT GCGTGCGTGG GAAGCTGCGC CGCAGGATCG CAATGCTGCC
GGCCTGCTGC TGCGCAACCT GCACACCGTC AAGGGCAGTG CGCGCATGGC CGGCGCCATG
ACGCTAGGTC AGGCTGCGCA CGAAATGGAA AGCGCCATTG AAGGCGGCCT GCGCCAGAAC
CGCGTGGATG GCGCACTGTT CCGCAAGCTC TACGTCTGGT TTGACCGCAT CCAGGCGCAC
GTCGATGCCC TGGGCGCGGG CAATCTGCTG CCGCTCGATG CCGGCCTAGC CGATGCCGCC
GATACGCAGC AGACGGCCGC CGACGCGCAT GCATCGTCCG GCGCATCGAT GCTGCCGGCT
GTTGCGGTAT CGACGAACGT CGATCTGACC GGCACGCGCA GCCCGGAAGC CGAAGCCCTG
GAAGTGGCCG AACGCCAGCG CGCGATGGTG CGCGTGCAGG CGCGTGCGCT CGATTCGCTC
ATCAACGATG CGGGTGAAGT CGGTGCCGCG CGTGCGCGCC TCGAGTCGGA AGTCGATGCG
CTCAAGACCT ACCTGTCGGA ACTGAACGAC AACGTAGCGC GTTTGCGCTC GCAGGTGCGC
GAGATCGAAA TCCAGGCCGA AACGCAGATG GAGTCGCGCA TTGCCGATGC GGCTGCACAT
TCCGAGTCGT TCGACCCCCT GGAGTTCGAC CGATTCACGC GCTTGCAGGA ACTCACGCGG
ATGATGGCCG AGTCCGTCAA CGACGTGGCG ACGGTGCAGC AGAACTTGTT CCGCGGTTTC
GATCAGGCGT CGCTCGATCT GGAAACCCAG GCACGCCTCA CGCGCGGCCT GCAGCGCAGC
CTGATGCGCG CGCGCATGGT GCAGTTCGAT ACCGTGGCAG ACCGTCTGTA TCGCGTGGCC
CGCCAGGCCG CGGCGGAAAC CGGCAAGGAA GTCCGTCTGT TCATCAAGGG CGGTACGGTG
GAACTGGATC GCAGCGTCCT GGACCGCATG GGCGGGCCGC TGGAACACAT GATCCGCAGC
GCCGTCGCAC ACGGCATTGA GTCGGCCGAC GAGCGCCGCG CCAAGGGCAA GAATCCGGCT
GGCGAGCTCA CGCTCGAGGT GCAGCAGGAA GGCAACGAAG TCGTGCTGCA CTTCGTTGAC
GACGGTGCCG GCCTGAACCT CGACCGCATT CGCGCACGCG CGCTGGAGCG TCAACTGCTG
GCCGCTGACG AAGAAGCCAG CGACGCGCGC CTCACCGAGA TGATCTTCAC GCCGGGCTTC
TCCACTGCCG ATCAGGTGTC GGAGCTGGCC GGTCGTGGCG TGGGCATGGA CGTGGTGCGT
GCCGAAACCG TCGCCCTGGG TGGCCGGATC TCGCTGCAGA CCACGCCCGA AGTCGGCACG
CGTTTCACCA TCCACCTGCC GCTGACGACT GCGATCACGC AGGTGCTGTT GGTGCGCGTG
AACGAGCGTG TTTACGCGAT TCCGTCGGGC ATGATCGACC ACGTACAGCA ACTGCGCCCG
CAGGCGCTGG CCGAGGCGTA TAACGCCGCC GCGCTGCAAT TGCCGACCGG CCCCGTGCCG
TTCCACTACT TTGGCGCGCT GCTCGAAGAA GCGACATCCG TCACGGGCGC GCGCAAGTAC
TCGCCGGCGG TGGTCGTGCG CAACGGTGCC GAGCGCGCCG CCGTGCACGT CGACGAAGTG
ATCGGCAACC GCGAAGTGGT GGTCAAACAC ATCGGCCCGC ACCTTGCGCG TCTGGAAGGT
ATTGCCGGTG CGACCACGCT GGGCGACGGC GAGATCGTGC TGATCTACAA CCCCGTGGTG
CTCACGCAGC GCTTCGAGCG CGAAGCCGCC GCACGTGGCC CATCCGATCA GGAAGCGACG
GGCGCCGTGG CCGAGCTGCA CCGCGACGGC AGCATCGACG CCGTGCCGGG CCTGGCCACA
CAGCCAATCG TGATGGTGGT CGACGATTCG CTCACGGTGC GCAAGGTCAC GCAGCGTCTG
CTCACGCGGT CCGGCTACCA GGCCGTGCTC GCGCGCGACG GCGTGGACGC GCTGCGTCAG
CTTCAGGAAG TCACGCCCGA CGCGATGCTC GTTGACATCG AAATGCCGCA CATGGACGGG
TTCGACCTCA CGCGCAACGT GCGTGCGGAT GAGCGCATCG GCGCCACGCC GATCATCATG
ATCACCTCGC GTACGGCCGA CAAGCACCGC CGTTACGCGG CTGAGATCGG CGTGAACGTC
TACCTGGGCA AGCCGTACAA CGAAGAGGAG TTGCTCCAGC ATCTGCGCAA CCTCATCGGC
GAGCGCGCGC CGGCGGCCAG GGCAGGCTGA
 
Protein sequence
MRHQSSAQPE SASVEAVGAP AGRQKSGPKP AVPARDLSAL AWVAPNMRAA LDDAVREFGE 
YAADVIADPE VIGARDTTSL RLAGQYLHQA AGALLIVGLR GVDVYCQAAK RLLEAVDAGS
VAADAQTLDV FSRAVQALQE YVSDLMAGMA EEPLRLFQPY QAVLSRLGEE RIHPADLWAD
ELRHLPALLL PSRDLPGLAR LRRKFELALL TALRAPASNA DGAVVDPSAA AAAYAPLEDL
LHGIRALERE PRRAGDDLQR DLWLVLALTF GALRAGLVPA DMTAKRLAAR VNLLLRQYSH
NNVHLPQGLL TDALYLLAGM AYSNAPAVPV GDDTLGPDIV ACVQAFAIPP THAPAGALHT
RQYYALLPTD ASDTLQRVGR SLETLSQQPA PAADELDAAL QTLALHADAL GQPALSDLSN
RLTEAAGQDV APTLQFLSRM LARPWAVHGE SGDLRSAWFA ARCSELAEHA RATQDGHAVP
APAWLTLLAE EAAQRRAHAE QVRALQTLLA SAETHLDAFE REGVESGGLQ EAARLFGEMQ
TAFAALDAYE AVHATEAAQS TINALQAAGE GATADRERYL AALAANVSGL QALLDALSAG
TELAGGQVDE IVIEGQLTPT ERETAWREFA FDTESGMLAR REPQSETLVG ADIANADAAS
PLQSLLDRLL AKQPVDPSDP LAAELRTALQ EARDAAAIDD DPARRRRLEE ALAQFDAWQV
GSPGALERMQ AALAAPVAAP AAAAPAPTAA RDTQSIDAEL LDIFLSEAEE VLAGVRADLQ
GLQAAADMGT GGLAAGSDLD LLTQLRRAFH TLKGSGRMVG LTRYGEAAWA IEQVMNVWLA
ENRVPTHDLA ALLTRAESEL STWAAAIAQS PQADHAIEPL VAAAERVRHG GPFVWLEAVP
ETQAAPEHAE PQVPEAPAAE PALHDIDAMQ PMELTAPDVP VAEAEEAVAL QWEDEPALPD
VEAPMPEATA PLVEHEAVEP AAEHVEETIQ DAAAEPVAAD ADAKVIPFPF AQTGELEEAP
HDDGVKEIGP VRISVALYNV YLQEADDLIR RLGVDFSEWR HEGRTPPSEL ALRAAHTLQG
SSAVVELEPV RQLAGALEQV LLNLNSRPVA MHPGDFRLLD QSIERMRGML HQFAASLWPD
ADEPLRRSLD ELCERLLVRP RLPLEPAPTA FTEAEQAENE TPSQAGEPEF EPAQVAPTFV
PVHESPVAEP AVGELVRQAP ADALDPALLE IFLEEAHVAL PELGQHLRAW EAAPQDRNAA
GLLLRNLHTV KGSARMAGAM TLGQAAHEME SAIEGGLRQN RVDGALFRKL YVWFDRIQAH
VDALGAGNLL PLDAGLADAA DTQQTAADAH ASSGASMLPA VAVSTNVDLT GTRSPEAEAL
EVAERQRAMV RVQARALDSL INDAGEVGAA RARLESEVDA LKTYLSELND NVARLRSQVR
EIEIQAETQM ESRIADAAAH SESFDPLEFD RFTRLQELTR MMAESVNDVA TVQQNLFRGF
DQASLDLETQ ARLTRGLQRS LMRARMVQFD TVADRLYRVA RQAAAETGKE VRLFIKGGTV
ELDRSVLDRM GGPLEHMIRS AVAHGIESAD ERRAKGKNPA GELTLEVQQE GNEVVLHFVD
DGAGLNLDRI RARALERQLL AADEEASDAR LTEMIFTPGF STADQVSELA GRGVGMDVVR
AETVALGGRI SLQTTPEVGT RFTIHLPLTT AITQVLLVRV NERVYAIPSG MIDHVQQLRP
QALAEAYNAA ALQLPTGPVP FHYFGALLEE ATSVTGARKY SPAVVVRNGA ERAAVHVDEV
IGNREVVVKH IGPHLARLEG IAGATTLGDG EIVLIYNPVV LTQRFEREAA ARGPSDQEAT
GAVAELHRDG SIDAVPGLAT QPIVMVVDDS LTVRKVTQRL LTRSGYQAVL ARDGVDALRQ
LQEVTPDAML VDIEMPHMDG FDLTRNVRAD ERIGATPIIM ITSRTADKHR RYAAEIGVNV
YLGKPYNEEE LLQHLRNLIG ERAPAARAG