Gene Rpic_0592 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0592 
Symbol 
ID6288424 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp627517 
End bp628368 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content64% 
IMG OID642624153 
ProductFlp pilus assembly protein CpaB 
Protein accessionYP_001898175 
Protein GI187927688 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3745] Flp pilus assembly protein CpaB 
TIGRFAM ID[TIGR03177] Flp pilus assembly protein CpaB 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.579977 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0629925 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAACG CGCGTGCAAT CGTGATGCTG ATCGTCGCAT TGGTAGCGGG GATCGCGGCC 
GTTGTCTCTG CATCACGTTG GCTGTCTCAG CAGTCAACCA GCTCAGTCAA GCAAGTCGTG
GTGGCCGCCA GCGACATGGA CCTCGGCCAA CCGCTGGGCA ATGAGCAGCT GCGCACGGTC
AGCTGGCCGG CGGGCAGCTT GCCACCGGGC ACGTTTGACG ACCCCAAGGC GTTGCAAGGG
CGCGTGGTGC GCGCCAGCCT GCAGAAAGGC GAACCGATTC TGGAAAACAA GCTCGCGCCC
ATCGGTACCA AGGGCGGGCT TTCCGCCGTC ATCGCGGAAG GCAAGCGCGC CATTACCGTA
CGTGTGAATG ACGTGGTGGG CGTAGCGGGC TTTGCGCTGC CGGGCAACCT GGTCGACGTG
ATCGTCAACA CCAACGAAGA CGCGAAGAGC GCGAGCAACA ATAACAACAG CATTTCCAAG
ATCGTGCTCG AAAAGATCCT GGTGCTGGCA GTCGCGCAGC AAGTCAGCCG GGACGATACC
CAGCCCAAGG TCGTCAACGC GGTGACGCTG GAAGTCACAC CCGATCAGGC AGAGAAGCTC
GATGTGGCGC GCAGCGTGGG AACGCTCTCG CTGGTGCTGC GCAACCAAGT CGACGTGGCC
GCCACAGCAA CCGGCGGCGC CACCAAGGGC ACCTTGCTGG GCACGCCCGC AGCCGAGCCC
GCACCCAAGG TGGTGATGGT CAGCACGACA CGTGCAACCG CCAAGGTGCG CCACGTTGCC
TCGGGCCCGA TCCGGCAGCG CGACTGCATC GGTGTGCTGG CCGGCGTGCA AGGCAGCATG
GAATGCTTCT GA
 
Protein sequence
MKNARAIVML IVALVAGIAA VVSASRWLSQ QSTSSVKQVV VAASDMDLGQ PLGNEQLRTV 
SWPAGSLPPG TFDDPKALQG RVVRASLQKG EPILENKLAP IGTKGGLSAV IAEGKRAITV
RVNDVVGVAG FALPGNLVDV IVNTNEDAKS ASNNNNSISK IVLEKILVLA VAQQVSRDDT
QPKVVNAVTL EVTPDQAEKL DVARSVGTLS LVLRNQVDVA ATATGGATKG TLLGTPAAEP
APKVVMVSTT RATAKVRHVA SGPIRQRDCI GVLAGVQGSM ECF