| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0588 |
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| Symbol | |
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| ID | 6287088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 622317 |
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| End bp | 623681 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642624149 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001898171 |
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| Protein GI | 187927684 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.106283 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.228191 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGATCC GCGAACAACT CTCCCGCCCG GAACACGGGC CGCTGTCCAT GAACGGACAC
GCACCGCACC ACCACAATGT GGCGGGCCAT CCCGCCTACC GGGACTTCAA GAAAACCGTG
CACGAAGTGG TGCTCGACCG CGTGGATCTG GAACGGCTGG CCCGCTTCCC GATCGAGCAG
GTGCGCCACG AGATCGGCAC CCTGGTCAAC AACATCATCG ACGAAGAAAA GCTGCTGCTC
AATGACACCG AGCGTCGGCA GATGACCACT GATGTGTATG ACGAGATGTT TGGCTTCGGC
CCGCTCGAGC CTCTGCTGCA GGACCCGACG GTGTCTGACA TCCTGGTCAA CACGGCCAAG
CAGGTCTACG TTGAACGCCG CGGCAAGCTG GAGCTTACCG ACGTCACCTT CTACGACGAT
GCACACCTGA TGAAGGTGAT TGAGAAGATC GTCTCGCGCG TGGGGCGTCG CATTGATGAA
ACCAGCCCGA TGGTGGACGC GCGCCTGCCC GATGGCTCGC GGGTGAACGC CATTATTCCG
CCCTCGGCCA TCGATGGCCC GCTGCTCTCG ATCCGCCGGT TTGCGACCAA CCCGCTGCAG
GTGTCGGACC TAATCGATCT CAAAACACTC ACACCGCCCA TGGCCAAGCT GATGCAAGCC
TTGTCGCAAG CCAAGGTGAA CGTGTTGGTA TCGGGCGGCA CGGGCAGCGG CAAAACCACA
CTCCTGAACA TCCTCTCGGG CTTCATCCCG GCAGACGAGC GGATGGTCAC CATCGAAGAT
GCCGCAGAAC TGCAACTGCG CCAACCGCAC GTGCTGCGCT TGGAAACGCG CCCGCCCAAC
ATCGAGGGTA AAGGCGAGAT CACGCAGCGT GCACTGGTGC GCAACGCCCT GCGCATGCGG
CCAGACCGCA TCCTCCTGGG CGAAGTGCGC GGCGGCGAGG CCCTGGACAT GCTCAACGCC
ATGAATACCG GTCACGAAGG GTCACTCACC ACCGTGCACG CCAACACCCC GCGCGATGCA
CTGACGCGCA TGGAAAACAT GGTGAACATG GCAGGCCTGA ACCTGCCACC CAAGACGATC
CGGCAGCAGA TCGCCTCGGC CATCACCGTG ATCATTCAAG TGGCGCGTTT GACGGATGGG
CGCCGCAAAG TCATCAGCAT CCAGGAGATC ACCGGCATGG AAGGCGATGT CATCAACATG
CAGGAAATTT TCACCTTCCA GCGCACGGGC ATCGCGCAAG ACGGCTCCGT CAAGGGGCAC
TTCCGCGCCA CAGGTGTCTA TCCGAAATTT GCCGAAAGAC TGCGCGTGTT CGGGGTGGGC
TTGCCAGACG AGACCTTTGA CCCGCAAAGG CACTTTGAGG TTTAA
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| Protein sequence | MSIREQLSRP EHGPLSMNGH APHHHNVAGH PAYRDFKKTV HEVVLDRVDL ERLARFPIEQ
VRHEIGTLVN NIIDEEKLLL NDTERRQMTT DVYDEMFGFG PLEPLLQDPT VSDILVNTAK
QVYVERRGKL ELTDVTFYDD AHLMKVIEKI VSRVGRRIDE TSPMVDARLP DGSRVNAIIP
PSAIDGPLLS IRRFATNPLQ VSDLIDLKTL TPPMAKLMQA LSQAKVNVLV SGGTGSGKTT
LLNILSGFIP ADERMVTIED AAELQLRQPH VLRLETRPPN IEGKGEITQR ALVRNALRMR
PDRILLGEVR GGEALDMLNA MNTGHEGSLT TVHANTPRDA LTRMENMVNM AGLNLPPKTI
RQQIASAITV IIQVARLTDG RRKVISIQEI TGMEGDVINM QEIFTFQRTG IAQDGSVKGH
FRATGVYPKF AERLRVFGVG LPDETFDPQR HFEV
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