| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0566 |
|---|
| Symbol | |
|---|
| ID | 6287521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 601556 |
|---|
| End bp | 602452 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642624128 |
|---|
| Product | dihydrodipicolinate synthase |
|---|
| Protein accession | YP_001898150 |
|---|
| Protein GI | 187927663 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase
[TIGR00683] N-acetylneuraminate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.427592 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCGT CGTTCAAAGG GATCGTCCCT GCCCTGATCA CCCCGATGAC CCCGACGGAA
GACGTGGACG AAAACGGCCT GCGCGTGCTG ATCGATCGGC TGATCGACGC GGGCGTCCAC
GGGCTCTTCG TGCTCGGCAC CAACGGCGAA TTCATTGCGC TGAGCGAAGA AGAGAAGCTG
CGCATCGCCC GTATTACCGT CGAGCAGGCG CGCGGCCGCG TGCCCGTGGT GGCGGGCACC
GGCGCCTATG CCACGCGTGA TGTGATCGCG CTCAACCACA AGATGCAAGA CGTGGGTGTG
GACGCCGTAT CCGTCATCAC GCCCTACTTC AACGGCGCCA CGCAGCCGGA GCTGTTTGCG
CATTACGAGC AGATCGCGCG CGCGACGTCG CTGCCGATCC TGCTGTACAC GATTCCGGCC
AAGGCCGGCG TGACGCTGAC CGTCGACACC GTGCGCCGGC TGGCGGACAT CCCGAACATC
CGCGCCATCA AGGACAGTGG TGGCGATTTC GACCGCCTGC TGCAGCTCAT CAACCTGCGC
CGTGACGACT TTGCCGTGTT CACCGGCACC GATTCGATGA TCCTCTGGAC ACTGATTGCC
GGTGGCGACG GCGCGGTGGC AGCCACCACC AATGCGGTGC CGCACGTGGT CATGTCGATC
TGGAATCAAT TCCAGGCGGG CAACATTCCG GCCGCGCGTG CTGCACAGGA ATCGCTGCGT
GCACTGCGTG ACGCGTTTGC GCTCGGCACC ATGCCCGTAG TGCTGAAGAC CGCCGCCGAG
ATGCTCGGCA TGCCCGCAGG GCCGGCACGC TCGCCGGCCA AGCCGCTCGA TGAGAAAAGC
CGCGAACGCC TGGCTGAAGC GCTCGCCATC TACCGTGCCG CGCTGAACGT CGCCTAA
|
|---|
| Protein sequence | MTASFKGIVP ALITPMTPTE DVDENGLRVL IDRLIDAGVH GLFVLGTNGE FIALSEEEKL
RIARITVEQA RGRVPVVAGT GAYATRDVIA LNHKMQDVGV DAVSVITPYF NGATQPELFA
HYEQIARATS LPILLYTIPA KAGVTLTVDT VRRLADIPNI RAIKDSGGDF DRLLQLINLR
RDDFAVFTGT DSMILWTLIA GGDGAVAATT NAVPHVVMSI WNQFQAGNIP AARAAQESLR
ALRDAFALGT MPVVLKTAAE MLGMPAGPAR SPAKPLDEKS RERLAEALAI YRAALNVA
|
|---|
| |