| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0560 |
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| Symbol | |
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| ID | 6288488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 593755 |
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| End bp | 594462 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 642624122 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001898144 |
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| Protein GI | 187927657 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.528532 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.858497 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAACCC GCCCCGCACC GCAAGCCGCT GCCGCCCGTC ATGCCATCGT GACTGGCGCC
TCCTCGGGCA TCGGCCGCGC CATTGCAGAG CGCCTGCTGG CCGACGGCTG GCGCGTGACA
GGCCTGTGCC GGACCGCGCC CGCCGAGCCG GTCGAAGGGT TGGAGATCGC ACAGGTGGAT
GTGACGGACT TCGCGCGGTT GGGCAAGGTA TGCGACAGCC TGGGCGCAGT TGACGCACTT
GTGCATGCTG CCGGCTTCAT GCGCACAGCC CCATTGGGCG AGCTTTGCGC CGCCGATGGT
GAGGCGATGT GGCGCGTGCA CGTCGATGCC GCCGCCTTCC TCGCAGACAG ACTCGTGCAG
CGCATGCCGG CCGGCGGCCG CATTCTCTTG ATCGGTAGCC GCACGGCCAA CGGCGCCCCA
ACGCGCAGCC AGTACGCCGC CACCAAGGCG GCCCTCGTGG GTATGGCGCG TTCGTGGGCC
GCCGAACTGG CGCCGCGCGG CATCACCGTC AACGTGATTG CGCCCGGCGC GACGGATACA
CCGTTCCTGC ACGACCCTGC ACGCGCGCAC ACCCCGCCGC GCATGCCGCC TATCGGCCGG
TTCATCGCGC CCGAAGAAGT GGCCGCCATG GCGGCATTCC TGGCAGGCGA ATACGGCGGC
GCCATCACCG GTCAGCAGAT CGTGATGTGT GGTGGGGCGT CGTTGTAG
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| Protein sequence | MPTRPAPQAA AARHAIVTGA SSGIGRAIAE RLLADGWRVT GLCRTAPAEP VEGLEIAQVD
VTDFARLGKV CDSLGAVDAL VHAAGFMRTA PLGELCAADG EAMWRVHVDA AAFLADRLVQ
RMPAGGRILL IGSRTANGAP TRSQYAATKA ALVGMARSWA AELAPRGITV NVIAPGATDT
PFLHDPARAH TPPRMPPIGR FIAPEEVAAM AAFLAGEYGG AITGQQIVMC GGASL
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