| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0508 |
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| Symbol | |
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| ID | 6289115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 542583 |
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| End bp | 545336 |
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| Gene Length | 2754 bp |
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| Protein Length | 917 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642624073 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001898095 |
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| Protein GI | 187927608 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0729931 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCGATA TCTTGAAAAA GAACCCAGAT ATGGACGCCA CCTCTGCTGA GCGGCCTGAC
CGTCCTGGAC CGGATGTGAT CGACCAGGAC AGCCGCAGGC CGCTGCCGCT CGCTGATGAC
CGCTACGAGG CGCTCGTCCG GCAAATGCCG GATGCGCTGT ACATCGTGGC GGACGACATT
ATCGTTTTCG TCAACGAGGC GGGCGTTCGC CTGTTTGGCG CGCAGACGGC ACGCGACATC
GTGGGCCATG AGCTGGACGA GTTCGTGCAC GACAACTCGA TGCACCTCGC CCGCCAGCGC
CGGGAGTGGA TGGTCTCGCA CGGTGCAGGC TTGCCCCCGG TCGAGCAGAC CTTGCTGCGC
TGCGATGGCA CACCAGTGGA GGTCGAGGTG CTTTCCGCGC CGGTGCAGCT TGGCTGGCGC
ACCGCCATCC AGGTGGTGGC ACGCGACATC ACCCAGCGCA AGCAGGCCGA ACAGGCCCTG
CGGGAATCCG AAGCCAATTA CCGTGCACTG GCCGCCGAAA CCGCACGCGC CAAGGAATTG
CTGCGCTGCG AAAAGACCGT GCTCGAACTC AGCTCGCGCA ATGTGCCGTT GCCCGACCTG
CTGGCCGAGG TGTGCCGGCT GGTGGAGGCC CTGCTCGACG ATGGCGCCAT GTGCTCGGTC
CTGCTCAGTG CTGATGGCGA GCACATCACG CAAGCCGTGG CACCGTCGCT GCCTTGCACG
CTCTCCCAGG TGCTGGTTGG GATCGCGATC GGCCCTTCGG TCGGTTCATG CGGCACGGCC
ATGTTCCTGA ACAAGACCGT GGTGGTGGAA GACATCGACG CCGACCCGCT CTGGGACGGC
TACCGCGACA TCGTTGCGCC GCTCGGCCTG CGCGCGTGCT GGTCGACGCC CATCCGCGGC
GACAACGCGC AGATGATCGG CGCGATGGGC ATCTACTACG ACACCCCGCG TGCGCCCACG
CGCGATGCCA TGGGGCTGCT CGACGGTATT ACCGACATCA TCGGTGTGGC CGTGCAGAAG
GCGCATATCG CGCGCGATCT GAGGGAGAGC GAAGAACGCT ATCGCCTCGC CGTCGACAAC
CTGACCGAAG GCATCGTCGT GCAGACGGCC GACGGCACCA TCCTCGCCTG CAACCCGAGC
GCGCGGCGCA TTCTCCGGGC GGGCAGCGTG TCGCCGGTGG GCACCAGCCA CCTGGCGCTG
ATGCGGCGCT CGTTGCGCGA AGACGGCAGC GAGATCCCGG TCAACGAGCG CCCCACGCGC
GTGGTGCTGG CCACCGGCCG GCCGCTGCTG GGCTTGACTG TTGGCCTGGA ACTGGTTGAC
GGCGATGTGG TGTGGGTGCA CGAAAACGTG CTGCCCATCG TGCGCCCTGG CGACAATACC
CCCTCAGCCG TGCTGATCTC GTTCAACGAT ATCGGGCCGG CCCGCGCGGC CCAGCAGCAG
CTCACTTTCC TCGCGCAGCG TGATGCGCTC ACCGGCTTGT ACAACCGCGC GTACTTCTCG
CAGCGGATGC AGGCGGTGAT GGAGCAGGCC GCCAGCCAGG CCAACGAGGG GCATCAGGTC
GCCGTGCTGT TCCTCGATCT GGATGGCTTC AAGAAGGTGA ACGACACGGC TGGCCACGAA
GCGGGCGACC ACCTGCTGCG CATCGTCGCG CAACGGCTGT CGGCCTGCGT GCGCCAGAGC
GATACGCTGG CGCGCCTCGG CGGCGATGAG TTCGTCGTGC TGCTCGACAA TGTGCGCTCG
TTGGGGGAAG CGGAGCGCTT GGCCAAGCGC ATCGTCCATT CGATCGCGCA GCCGTTCTCG
ACCAGCGGCA CGGAGTACTA CCTGGGCGCG TCGATCGGCA TCGCGCTGTA CCCGGAGCAC
GGCAACGACG CCGCCACGCT GCTGCGCTGT GCGGATGCCG CCATGTACAA CGCCAAGCAG
AACGGCCGCA ACCAGCATCG CGTGTACACC GCGCGCCTGT CGCAGCGGGC GCAGCGGCGC
TTCCAGCTGG AATACCACCT GCGCCGCGCG CTGACGGCGG GCGAGCTGTC GTTGCGCTTC
CAGCCTATCG TCGACGCCAC ATCGATGGAC ATCGTTGGCG CTGAAGTGCT GCTGCGGTGG
CACAGCACCG AACTGGGCGA GGTGTCCCCC GCCGAGTTCA TTCCCGTGGC GGAAGACGCC
GGGCTTATCG GCGACATCGG CGAATGGGTG CTGGCGCAGG CGTGCCGCCA GGCTGCGCAT
TGGCGCGCCA CCTGCATGCC GGAGTTCTTC GTGGCCGTGA ACCTGTCGCC GCGCCAGTTT
GGCGAGGGAC TGGTGCCGAC CATCTCGCGC TGCCTGACCG AAGCTGGATT GCCCGCCAGC
GCGCTGGAAA TGGAGATCAC CGAAGGCCTG CTCATGCGCG ACACGGCCGC AGTGATGCCG
ATGCTCGATG CGCTCACGGC CCTGGGCATT CGCATCTCGA TCGATGATTT CGGCACGGGC
TATTCGTCAC TGTCGTATCT GCAACGCTTC CCGATCGACA ACCTGAAGGT GGATCGCTCG
TTCGTCTCGG GCATTCCGCG CCATCGCGAT TCGGTGGTGA TCTCGCGTGC CGTGGTCGCG
ATGGCCGCGT CGCTGGACAT GACCGTCACG GCAGAGGGTG TCGAGACGCT GGAGCAGGCC
GAGTTCCTGC AAGCCGCGGG GTGCGACAAG TTGCAGGGCT TCCTGTTCGG CCCCCCGATG
ACGGCTGCCG CCTACGAGTC ACGGCTGCGC CGCGACCGTT CCGCGCGGGC CTAG
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| Protein sequence | MVDILKKNPD MDATSAERPD RPGPDVIDQD SRRPLPLADD RYEALVRQMP DALYIVADDI
IVFVNEAGVR LFGAQTARDI VGHELDEFVH DNSMHLARQR REWMVSHGAG LPPVEQTLLR
CDGTPVEVEV LSAPVQLGWR TAIQVVARDI TQRKQAEQAL RESEANYRAL AAETARAKEL
LRCEKTVLEL SSRNVPLPDL LAEVCRLVEA LLDDGAMCSV LLSADGEHIT QAVAPSLPCT
LSQVLVGIAI GPSVGSCGTA MFLNKTVVVE DIDADPLWDG YRDIVAPLGL RACWSTPIRG
DNAQMIGAMG IYYDTPRAPT RDAMGLLDGI TDIIGVAVQK AHIARDLRES EERYRLAVDN
LTEGIVVQTA DGTILACNPS ARRILRAGSV SPVGTSHLAL MRRSLREDGS EIPVNERPTR
VVLATGRPLL GLTVGLELVD GDVVWVHENV LPIVRPGDNT PSAVLISFND IGPARAAQQQ
LTFLAQRDAL TGLYNRAYFS QRMQAVMEQA ASQANEGHQV AVLFLDLDGF KKVNDTAGHE
AGDHLLRIVA QRLSACVRQS DTLARLGGDE FVVLLDNVRS LGEAERLAKR IVHSIAQPFS
TSGTEYYLGA SIGIALYPEH GNDAATLLRC ADAAMYNAKQ NGRNQHRVYT ARLSQRAQRR
FQLEYHLRRA LTAGELSLRF QPIVDATSMD IVGAEVLLRW HSTELGEVSP AEFIPVAEDA
GLIGDIGEWV LAQACRQAAH WRATCMPEFF VAVNLSPRQF GEGLVPTISR CLTEAGLPAS
ALEMEITEGL LMRDTAAVMP MLDALTALGI RISIDDFGTG YSSLSYLQRF PIDNLKVDRS
FVSGIPRHRD SVVISRAVVA MAASLDMTVT AEGVETLEQA EFLQAAGCDK LQGFLFGPPM
TAAAYESRLR RDRSARA
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