Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0477 |
Symbol | |
ID | 6288437 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 510755 |
End bp | 511276 |
Gene Length | 522 bp |
Protein Length | 173 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642624042 |
Product | putative type 4 fimbrial pilin signal peptide protein |
Protein accession | YP_001898064 |
Protein GI | 187927577 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0748911 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTTTCA AGCACAGCAA GGGAATAAAG CGTCGGGCGG GCGGCTTTAC GCTGATCGAG CTGATGATTG TGGTGGCGAT TGTTGGGATT CTCGCGGCGT TGGCGATTCC GGCGTATCAG GACTATACGA TTCGGTCGCG GGTGACGGAG GGGCTAATCA TCGCTGTGCA GGCGAAGGCG CTGGTGGTCG AGAACGCTGC AAACGCACAA AGCAGCCTAT CTCTGGGCGC CGCTTCGCTA TCGGCCACAC GAAATGTGGC CTCATTAGAC ATTGATGGTA GCTCTGGTGA AATTTCCATC GGGTTCACCT CTAGCGTGGC TGGAGCCGGC AGCAACACGC TAATCCTCAC GCCCTACTCA GGCACTGCGT CGTCTACTTA CGCGAATCTC AGTGCGGGGT CGGCTCCTCC AGCAGTCGTC ATGTGGGCAT GTTCGGCGAA TGGCAAGCAA ATGCCACCGA ACGTCAACCG CACCGGGACG CCAACTTTGG ATGCTCGATA TGCTCCGGCG GAGTGCAGAT AG
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Protein sequence | MVFKHSKGIK RRAGGFTLIE LMIVVAIVGI LAALAIPAYQ DYTIRSRVTE GLIIAVQAKA LVVENAANAQ SSLSLGAASL SATRNVASLD IDGSSGEISI GFTSSVAGAG SNTLILTPYS GTASSTYANL SAGSAPPAVV MWACSANGKQ MPPNVNRTGT PTLDARYAPA ECR
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