Gene Rpic_0477 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0477 
Symbol 
ID6288437 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp510755 
End bp511276 
Gene Length522 bp 
Protein Length173 aa 
Translation table11 
GC content58% 
IMG OID642624042 
Productputative type 4 fimbrial pilin signal peptide protein 
Protein accessionYP_001898064 
Protein GI187927577 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4969] Tfp pilus assembly protein, major pilin PilA 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0748911 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTTTCA AGCACAGCAA GGGAATAAAG CGTCGGGCGG GCGGCTTTAC GCTGATCGAG 
CTGATGATTG TGGTGGCGAT TGTTGGGATT CTCGCGGCGT TGGCGATTCC GGCGTATCAG
GACTATACGA TTCGGTCGCG GGTGACGGAG GGGCTAATCA TCGCTGTGCA GGCGAAGGCG
CTGGTGGTCG AGAACGCTGC AAACGCACAA AGCAGCCTAT CTCTGGGCGC CGCTTCGCTA
TCGGCCACAC GAAATGTGGC CTCATTAGAC ATTGATGGTA GCTCTGGTGA AATTTCCATC
GGGTTCACCT CTAGCGTGGC TGGAGCCGGC AGCAACACGC TAATCCTCAC GCCCTACTCA
GGCACTGCGT CGTCTACTTA CGCGAATCTC AGTGCGGGGT CGGCTCCTCC AGCAGTCGTC
ATGTGGGCAT GTTCGGCGAA TGGCAAGCAA ATGCCACCGA ACGTCAACCG CACCGGGACG
CCAACTTTGG ATGCTCGATA TGCTCCGGCG GAGTGCAGAT AG
 
Protein sequence
MVFKHSKGIK RRAGGFTLIE LMIVVAIVGI LAALAIPAYQ DYTIRSRVTE GLIIAVQAKA 
LVVENAANAQ SSLSLGAASL SATRNVASLD IDGSSGEISI GFTSSVAGAG SNTLILTPYS
GTASSTYANL SAGSAPPAVV MWACSANGKQ MPPNVNRTGT PTLDARYAPA ECR