Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0463 |
Symbol | |
ID | 6288976 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 495263 |
End bp | 496966 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642624028 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_001898050 |
Protein GI | 187927563 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAACCG TGCAGAGTGC ACCGAACGCG CCCGTCGGGC GTGTGCAGCC CGCGCCCATG ACGAGGGAGG AGAAGAAGGT CATCTTTGCC TCGTCGCTGG GGACGGTGTT CGAGTGGTAC GACTTTTATC TTTACGGCTC GTTGGCGGCC ATCATCGCCA AGCAGTTCTT CTCGGGCCTG GACCCCACGG CGGGTTTCAT CTTTGCCCTG CTGGCCTTTG CCGCCGGCTT CCTGGTGCGC CCGTTCGGCG CGCTGGTGTT CGGCCGTCTG GGCGACATGA TCGGGCGCAA GTACACGTTC CTGGTCACCA TCGTCATCAT GGGTACGTCG ACGTTCATCG TCGGCCTGCT TCCGTCGTAC GGCACGATTG GCGTTGCTGC GCCGGTCATC CTGATCGCGC TGCGCATGCT GCAAGGTCTG GCACTGGGCG GTGAGTACGG CGGCGCCGCC ACGTATGTCG CCGAGCACGC CCCGCACGGC CGCCGCGGTG CCTACACATC GTGGATCCAG ACGACGGCTA CGTTGGGCCT GTTCCTCTCG CTGGTCGTCA TCCTGGCCGT GCGCGAACTG ACCGGCAAGG CGTTCGACGA CTGGGGCTGG CGCATCCCGT TCCTGGTCTC GATCCTGCTG CTCGCCACGT CGGTGTACAT CCGCCTGTCG ATGAGCGAAT CGCCCGCATT CCAGAAGATG AAGGCCGAAG GCAAGACCTC CAAGGCCCCG TTGACAGAAG CATTCGGCCA ATGGCGCAAC CTGAAGATCG TCATCCTGGC GCTGCTCGGC CTGACCGCCG GCCAGGCTGT GGTGTGGTAC ACGGGCCAGT TCTACGCACT GTTCTTCCTC ACGCAGGTGC TGAAGGTCGA CGCATTCACG GCCAACGTGC TGATTGCGGT GGCGCTTGCC ATCGGCACGC CGTTCTTCGT GTTCTTCGGC TCGCTGTCGG ACCGCATCGG TCGCAAGAAG ATCATCATGG CCGGCTGCCT GCTGGCGGTG CTGACCTACT TCCCGCTGTT CAAGGCGCTC ACGCACTACG CCAACCCGGC GCTGGAGCGC GCCCAGCAGA CCGCGCAGAT CACCATCACG GTCGATCCGA AGGAGTGCTC GTTCCAGGGC AGCCCGATCG CCCGCGAGGT GGACTTCCGC TCGTCGTGCG ACATCGCCAA GCGCACGCTG GCGCAGTCGT CGGCCAGCTA CGAGACGGTC GAAGGCCCGG CCGGCACGGT CGCATCGGTG TCGATCGCGG GTAAGCAGAT CACCTCGCTC AACGCCACCC GCACGGCAGA CGGCCAGAAC TTCGACGCCG ACAGCAAGGC CAAGATCGCC GACTTCAAGA AGCAGGTGAG CGAGTCGCTC AAGGCGGCCA ACTACCCGGC CAAGGCCGAT CCCGCCCAGA TGAACACGAT CATGGTGCTG GTGATCCTGG TGATCCTGGT GATCTACGTG ACCATGGTCT ACGGCCCGAT CGCGGCAATG CTGGTGGAGA TGTTCCCGAC GCGCATCCGG TACTCGTCGA TGTCGCTGCC GTATCACATC GGCAACGGCT GGTTTGGGGG CCTGCTGCCG ACCATTTCGT TCGCCCTCGT GGCCCAGAAC GGCAATATCT ATCACGGTTT GTGGTACCCG ATCTGGATCG CGGCCATCAC CTTCGTGATC GGTGTGCTGT TCGTGCGCGA GACCAAGGAT GTGGATATTT ATCGCAACGA CTAA
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Protein sequence | MATVQSAPNA PVGRVQPAPM TREEKKVIFA SSLGTVFEWY DFYLYGSLAA IIAKQFFSGL DPTAGFIFAL LAFAAGFLVR PFGALVFGRL GDMIGRKYTF LVTIVIMGTS TFIVGLLPSY GTIGVAAPVI LIALRMLQGL ALGGEYGGAA TYVAEHAPHG RRGAYTSWIQ TTATLGLFLS LVVILAVREL TGKAFDDWGW RIPFLVSILL LATSVYIRLS MSESPAFQKM KAEGKTSKAP LTEAFGQWRN LKIVILALLG LTAGQAVVWY TGQFYALFFL TQVLKVDAFT ANVLIAVALA IGTPFFVFFG SLSDRIGRKK IIMAGCLLAV LTYFPLFKAL THYANPALER AQQTAQITIT VDPKECSFQG SPIAREVDFR SSCDIAKRTL AQSSASYETV EGPAGTVASV SIAGKQITSL NATRTADGQN FDADSKAKIA DFKKQVSESL KAANYPAKAD PAQMNTIMVL VILVILVIYV TMVYGPIAAM LVEMFPTRIR YSSMSLPYHI GNGWFGGLLP TISFALVAQN GNIYHGLWYP IWIAAITFVI GVLFVRETKD VDIYRND
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