Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0417 |
Symbol | fadE |
ID | 6289253 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 445428 |
End bp | 447938 |
Gene Length | 2511 bp |
Protein Length | 836 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642623984 |
Product | acyl-CoA dehydrogenase |
Protein accession | YP_001898007 |
Protein GI | 187927520 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.332729 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.000590412 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATGACGA TCTGGATCGT CCTGCTTTGC ATCGGCGTGC TTGGGCTCGC CAGCATGGAA GCCTCGGCGT TCGCCTGGCT GGTCGCGACC GCCGTGTGGC TCGTGGCAGG CGCCTGGCTG GGCTTGGTGG GCCCGGTGAT GACTACGGTA CTCGCCATCG TCTTTGTGCT GCCGGCGCTG GTGCTCGCGC TCAAGCCGCT GCGCCGGGCA CTCATCACGC GCCCGGTACT GGCAATGTTC CGCAAGATCA TGCCGGAGAT GTCGCAAACC GAGCGCGACG CCATTGAAGC GGGCACGGTC TGGTGGGATG CCGAACTGTT CTCCGGCCGG CCCAACTGGT CGCGATTGCT GTCTTCGCCG CAGCCGCGTC TGTCGGCCGA AGAGCAATCT TTCCTCGACG TGGAAACCGA AAAACTCTGC GACCTTGCCA ACGATTGGGA AAGCACGCAG ATCTGGCAGG ACCTGTCGCC CGACGCGTGG GACTATGCGA AGCGCGCCGG CTTCCTGGGC ATGATCATCC CGAAGGAATA CGGCGGCAAA GGGTTCTCGG CATACGCTCA CTCGCAGGTC ATCATGAAGC TGTCGACGCG CTGCTCTGCC GCGGCCGTGT CGGTCATGGT GCCCAACTCG CTCGGCCCCG CTGAGCTGCT TCTGCACTAC GGCACCGAAG CGCAGAAAAA TCATTACCTG CCGCGCCTCG CACGCGGTGA AGAAATCCCC TGCTTTGCGC TGACCAACGC ATATGCCGGC TCCGATGCCG CCGCCATTCC CGATGTGGGC GTGGTCTGCC GCGGCGTGCA CGAAGGCCGC GAGACGCTCG GCTTTCGCGT GACATGGAGC AAGCGCTACA TCACGCTCGG CCCCATCGCC ACGGTGCTGG GGCTCGCATT TCGCGCGGTC GATCCGGATG GCTTGCTCGG CGGCGACAAG GAGCCCGGCA TTACCTGCGC GCTCATCCCG ACGAAGCACC CGGGCGTAAA CATCGGCCGC CGCCATTGGC CGCTCAATGC GGTGTTCCAG AACGGCCCGA ACTCCGGCAA GGACGTGTTC ATCCCCATCG ACTGGGTGAT CGGCGGCCAG GCGCAAGTCG GCCGTGGCTG GCGCATGCTG ATGGAATGTC TGGCAGCGGG CCGGGCGATT TCGCTGCCGT CGTCCAACGT GGGCATGGCC AAGCTGGCCG TGCGCAGCAC CGGCGCCTAT GCCGCCGTGC GACGCCAGTT CCGTACGCCC ATCGGCAAGT TCGAAGGGAT TCAGGAAGCG CTCGGCCGCA TGGGCGGCAA CCTGTACATG ATGGATGCGG CGCGGCGTCT TTCCGCGCTG GCCGTGGACC TGGGCGAGAA GCCCTCGGTC ATCTCCGCCA TTGCCAAATA CCACGTCACC GAACGTGCGC GCGATGTGGT CACCGATGCG ATGGACATCG TGGGCGGCAA GGGCATCTGC ATGGGCCCGA ACAACTTCCT GGCGCGCGCT TATCAGCAGG TGCCGATCGC CATCACGGTG GAAGGCGCGA ACATCATGAC GCGCTGCCTG ATCATCTTCG GGCAGGGCGT GATCCGTTGC CATCCGTATG TGCTGCGCGA GATGACGGCC GCGCAAGGCG CCGATTCAAC CGAGACGCTG CGTGCGTTCG ATACGGCGCT GTTCGGCCAC GGCGCATTCA TCGCGGGCAA CCTGGTGCGC GCCTTTTTGC ATGCGCTCTC CGGCGGGCGC GTGGGAAGCG CGCCGGGCAA TGCCGCACCG GAAATGCAGC GCTACTACCG CGCCGTGAAC CGCTTCTCGA CGGCGCTGGC GCTGCTGTCC GATGTGTCGA TGTTCACGCT GGGCGGCACG CTCAAGCGCC GCGAGAGCAT CACGGGGCGG CTGGGCGACA TCCTCTCGCA GATGTACCTG ATCTCGTCCG CGCTCAAACG CTTTGAAGAT GACGGCCGCC CTGCCGAGGA CGCGCCGCTC GTGCATTGGT CGGTTCAGGA CGCGCTGGTG AAGGCGCACG ATGCGCTCGA CGGCGTGCTG GCCAATTTCC CGAACACTGG CATCGCGGCG CTGCTGCGCG CGCTGATCTT CCCGTTCGGT ACGCCGTATC GCAAGCCGTC GGATGCGCTG GCCGCGCAGG TCGCCGAGCT GATGCAAACG CCGGGCGCTG TGCGCGATCG CCTGCTGGCC GACTCGTACT GCCCGACGCC CGAAGTCGAC CCGATCGCCT ATGGCGAAGC GGCCTTCCGC CTGCAGCCGG CCGTGGACGC AATCGAGCAG CGCTTGAAAC CAGCCATCCG CGCAGGCAAG CTGCCGCCCG TGCCGCAGAG CCTGCCCGAC TTCGAAGCCT GGACCGCACA AGCCGTGGCA CAAAACCTCA TTGACGAAGG CGAGCGAAAG CAGCTGTGCG ACTACGCGCG CTACGGCGAA CACGCGGTTG CCGTGGATGA CTTCCCGCCC GACTTCAACC TGATGGCCGA CCTGCAGCGC CGCAAGGATG CGCTCGATGC CCTGCAGGCC GCCGAGCGCC GCGCAGCCTG A
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Protein sequence | MMTIWIVLLC IGVLGLASME ASAFAWLVAT AVWLVAGAWL GLVGPVMTTV LAIVFVLPAL VLALKPLRRA LITRPVLAMF RKIMPEMSQT ERDAIEAGTV WWDAELFSGR PNWSRLLSSP QPRLSAEEQS FLDVETEKLC DLANDWESTQ IWQDLSPDAW DYAKRAGFLG MIIPKEYGGK GFSAYAHSQV IMKLSTRCSA AAVSVMVPNS LGPAELLLHY GTEAQKNHYL PRLARGEEIP CFALTNAYAG SDAAAIPDVG VVCRGVHEGR ETLGFRVTWS KRYITLGPIA TVLGLAFRAV DPDGLLGGDK EPGITCALIP TKHPGVNIGR RHWPLNAVFQ NGPNSGKDVF IPIDWVIGGQ AQVGRGWRML MECLAAGRAI SLPSSNVGMA KLAVRSTGAY AAVRRQFRTP IGKFEGIQEA LGRMGGNLYM MDAARRLSAL AVDLGEKPSV ISAIAKYHVT ERARDVVTDA MDIVGGKGIC MGPNNFLARA YQQVPIAITV EGANIMTRCL IIFGQGVIRC HPYVLREMTA AQGADSTETL RAFDTALFGH GAFIAGNLVR AFLHALSGGR VGSAPGNAAP EMQRYYRAVN RFSTALALLS DVSMFTLGGT LKRRESITGR LGDILSQMYL ISSALKRFED DGRPAEDAPL VHWSVQDALV KAHDALDGVL ANFPNTGIAA LLRALIFPFG TPYRKPSDAL AAQVAELMQT PGAVRDRLLA DSYCPTPEVD PIAYGEAAFR LQPAVDAIEQ RLKPAIRAGK LPPVPQSLPD FEAWTAQAVA QNLIDEGERK QLCDYARYGE HAVAVDDFPP DFNLMADLQR RKDALDALQA AERRAA
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