| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0411 |
|---|
| Symbol | |
|---|
| ID | 6289712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 437812 |
|---|
| End bp | 438738 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642623978 |
|---|
| Product | OmpW family protein |
|---|
| Protein accession | YP_001898001 |
|---|
| Protein GI | 187927514 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3047] Outer membrane protein W |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0130302 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCA CCGCCCGCCG CCTTGCTGCA GCCATTGCCT GCGCCGCCGC CAGCACCCTT
GCTGCCCCCC TGGCTCACGC CCAATCCACC GCAGAGGCCA ACGTGGCCGC AAGCGCCAGC
AATGGCAGTG GCATGAGCAG CGGTGGCGGT GGCGGCTTCA GCGGCTTCAT GGACAACTAC
GTCTGGGGCC GCAACGTCAT GGCGCTGGGC TGGTTCTACA TCCGCCCGAT GGATTCGGCC
ACGCCGCTGA CCACCACCAC CAGCGCGCTG GGCCTGGGCA CCTACCAGTC GCCAGGAACT
GACGTGAAAG TCAGTAACGC CAATACGCTG TCGCTCACGT TCACGCACTT CTTTAACGAC
AACATCGCCG GTACGTTCGT GGGTGGCGTT CCGCCCAAGT TCAACCTGTA CGGCAGCGGC
AATGTGATCG CGCCGGTGCC GGTGGTCGGG CCGCTGACGC TAGTCAACCT GGGCCTGCCG
CAAAACAACC CGGTCGCCAC CGTGCGTGAA TGGAGCCCGG CGATCGTCGC GCAGTACTAC
TTCGGCACCA AGGAAAGCAA GCTGCGCCCG TTCGTCGGCG CAGGCGTCAG CTACAACTTC
TTCACCAACC TGAAACTGAA CCAGAACTTC GTCAACGGCC TGCAGAACCT GGGGCAGGTG
CTGCAGCTGG GCATGGGCCA GGTTCCGACT GGCCCGGCCA AGGTGACGGC GGAAACGTCC
AGCTCGTGGA CGCCGGTGGC CAACGTAGGC GTCTCGTATG AGTTCGCCAA GAACTGGACC
GCCATCGGCA CGGTGTCTTA CCTGCCGCTG AAGACGACCT CCACCATCAC GATCCGCAGC
CAGCAAGGCC AGGTGCTGGC GGTCAACAAG ACCGACATCA AGGTCGACCC GATCGTGTTC
GGCTTGGCTG TGGGCTACAA GTTCTAA
|
|---|
| Protein sequence | MNRTARRLAA AIACAAASTL AAPLAHAQST AEANVAASAS NGSGMSSGGG GGFSGFMDNY
VWGRNVMALG WFYIRPMDSA TPLTTTTSAL GLGTYQSPGT DVKVSNANTL SLTFTHFFND
NIAGTFVGGV PPKFNLYGSG NVIAPVPVVG PLTLVNLGLP QNNPVATVRE WSPAIVAQYY
FGTKESKLRP FVGAGVSYNF FTNLKLNQNF VNGLQNLGQV LQLGMGQVPT GPAKVTAETS
SSWTPVANVG VSYEFAKNWT AIGTVSYLPL KTTSTITIRS QQGQVLAVNK TDIKVDPIVF
GLAVGYKF
|
|---|
| |