Gene Rpic_0408 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0408 
Symbol 
ID6289654 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp434743 
End bp436113 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content64% 
IMG OID642623975 
Product(dimethylallyl)adenosine tRNA methylthiotransferase 
Protein accessionYP_001897998 
Protein GI187927511 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0921493 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAG TCTTCATCAA AACCTACGGC TGCCAGATGA ACGAGTACGA CTCGGACAAG 
ATGTCCGACG TGCTCAACGC GGCTGAAGGT CTCGTCCCCA CCGACACGCC CGAAGATGCG
GACGTGATCC TCTTCAACAC ATGCTCCGTA CGCGAGAAGG CGCAGGAGAA AGTGTTCTCC
GAACTCGGCC GCGTGAAGGC GCTCAAGGCG CTCAAACCGG ATCTCGTGGT CGGCGTAGGT
GGCTGCGTGG CCAGCCAGGA AGGTGCGTCC ATCGTGGCGC GCGCCCCTTA CGTTGACGTG
GTGTTCGGGC CGCAGACGCT GCACCGCCTG CCCGACCTGA TCGCAGCACG CCGCCGCACG
GGCCGCTCGC AGGTCGACGT GTCCTTCCCC GAGATCGAGA AGTTCGACCA CCTGCCGCCC
GCGCGCGTGG ATGGCGCCAG CGCCTACGTG TCAATCATGG AAGGCTGCTC GAAATACTGC
AGCTACTGCG TGGTGCCGTA CACGCGCGGC GAGGAAGTCT CGCGCCCGTT CGACGACGTG
CTGGCCGAAG TGGCCGGCCT GGCCGAACAG GGCGTGCGCG AAGTCACGTT GCTGGGCCAG
AACGTCAACG CCTACATCGG CAAGATGGGC GACACGAGCG AGCGTGCGGA TTTCGCGCTG
CTGCTCGAAT ACGTGGCTGA GATTCCGGGT ATCGAGCGCA TCCGCTACAC GACCAGCCAC
CCGAAGGAAT TCAGCTCGCG CCTGATCGAG GCCTATGCCA CCAACCCGAA GCTCGTCGAC
CACCTGCACC TGCCCGTGCA GCACGGCTCC GACCGCATCC TGATGGCGAT GAAGCGCGGC
TACACGGTGC TCGAATACAA GAGCAGCATC CGCAAGCTGC GCGCGATCCG GCCGAACATC
TCGATCGCCA CCGACTTCAT CGTCGGCTTT CCGGGCGAGA CCGATGCAGA CTTCGCCAAG
ACGATGGACC TGATTCACGA GATCGGCTAC GACACCTCGT TCAGCTTCAT CTACAGCCCG
CGCCCGGGCA CGCCGGCCGC GAACCTGCAC GACGATACGC CCCAGGCCGT CAAGCTCGAA
CGCCTAAAAC ACTTGCAGGC GACCATTGAA GAGAACGTGG CGCGCATCAG CCAAGGCATG
GTCGGCAGCG TGCAGCGCAT TCTGGTGGAA GGCCCGTCGC GCAAGGATCC GACCGAACTG
CACGGCCGCA CCGAGAACAA CCGCGTCGTC AACTTCGCGC TACCCGATCT GCCGCAGGTG
CGCCGCGAAC AGCTGATCGG CCAGATGCTG GACGTGCGCA TCGTGCACGC GTTCCCGCAT
TCGCTGCGTG GCGAAGTGGC CGAAGAGCGT ATGGCCAGCG CGGCTCACTG A
 
Protein sequence
MKKVFIKTYG CQMNEYDSDK MSDVLNAAEG LVPTDTPEDA DVILFNTCSV REKAQEKVFS 
ELGRVKALKA LKPDLVVGVG GCVASQEGAS IVARAPYVDV VFGPQTLHRL PDLIAARRRT
GRSQVDVSFP EIEKFDHLPP ARVDGASAYV SIMEGCSKYC SYCVVPYTRG EEVSRPFDDV
LAEVAGLAEQ GVREVTLLGQ NVNAYIGKMG DTSERADFAL LLEYVAEIPG IERIRYTTSH
PKEFSSRLIE AYATNPKLVD HLHLPVQHGS DRILMAMKRG YTVLEYKSSI RKLRAIRPNI
SIATDFIVGF PGETDADFAK TMDLIHEIGY DTSFSFIYSP RPGTPAANLH DDTPQAVKLE
RLKHLQATIE ENVARISQGM VGSVQRILVE GPSRKDPTEL HGRTENNRVV NFALPDLPQV
RREQLIGQML DVRIVHAFPH SLRGEVAEER MASAAH