| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0386 |
|---|
| Symbol | |
|---|
| ID | 6289377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 410043 |
|---|
| End bp | 412100 |
|---|
| Gene Length | 2058 bp |
|---|
| Protein Length | 685 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642623953 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001897976 |
|---|
| Protein GI | 187927489 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCCA GCAGTTACAA CCCTCTTCTC GTCCTGCTTT CCCTCTTTGT GGCCATCCTG
GCGTCGTATA CGGCGCTGGA TATGGCCGGA CGGGTCGTCA CCGCACAAGG CCGCGCAGCG
TTGTGGTGGC TTATCGGCGG CGCGTCGGCC ATGGGGCTGG GCATCTGGTC GATGCACTTT
GTCGGCATGC TGGCGCTGAA CCTGCCGATC CCGGTTGGAT ATGACGTGGG CATCACGCTT
GCCTCACTCG CCATCGGCAT TGGGGCGTCG ACGTTTGCGT TGTGGCTGGT CAGCCGGCGT
GAACTGCCTT GGCCGCGCCT GGTAGGCGGA GCGCTGCTCA TGGGGGCCGG CGTGGCGGGC
ATGCACTACA CGGGCATGGC CGCGCTGCGC ATGAATCCGG GCATTCAATA CAACCCCGGC
AGATTTGGGG TGTCGGTCGT GATTGCCGTG CTGGCATCGG GCGTTGCGCT GTGGATCGCA
TTCCGCCTGC GGCGGCAGTC GCGGCGCGTC CGTGCGCTGC GTGCCGGTTC AGCGGTGGTG
ATGGGCGTGG CCATTGTCGG CATGCACTAC ACGGGCATGT CGGCGGCGGC GTTTCCATTG
GGCAGCGTGT GTGGCGCTGC GCATACCGGC GCGAGTGCCG AATGGCTGGC GCTGGTCATC
ATCATCGTCA CGCTGGCGGT GCTGGCTATC GCGCTCATCA TCTCGGTGCT CGACTTGCGC
ATGGAGGCAC GCACCGCCTT GCTGGCGAAC TCGCTGGCCG CGGCCAACAA GGAGCTGGCC
TACCTGGCGC TGCACGACAA CCTGACCAAA CTTTCCAACC GCGTGCTGCT GGAAGACCGT
CTGACCCAGG CGATCCGCAC CGCCGAACGT GAGAAGCACC GCTTCGCGCT CATGTTCATG
GACCTCGATG GCTTCAAGGC CGTCAACGAT GTCTATGGCC ACCATGTGGG TGACCTGCTG
CTGATCGACG TTGCCCAGCG CATCGGTGCG CGGGTGCGCC AGCAGGACAC CGTGGCGCGT
GTCGGCGGCG ACGAATTCGT GGTTCTCGCC TATGTGGACG ATCCGGAAGA CGCCGGCACC
CTGGCCAACG CGCTGCTAGA AGTGGTGCGC GAGCCCTTCA TGGCCGGCGG TCACGAGCTG
CGCGTCTCCA CCAGCATCGG CATCGCGATC TACCCTGGCG ACGGCGGCAA CCAGCACGAC
CTGCTGACCA ATGCCGATGC GGCGATGTAC CACGCAAAGG GCCTGGGCCG GAACGCCTAT
AGCTTTTTTG AGCCATCGAT GAACGCCGAC GTGCATCAGC AGTTGCAGCT TGTGCAAGAC
CTGCGACGCG CGGTCGAGCG GCACGAACTC GTGCTGCATT ACCAGCCGAA ATTCAACGCG
CCCAACGGGC CGATCATGGG CGTCGAGGCG CTGGTGCGCT GGCAGCATCC GCAGCGCGGT
CTGGTGCCCG CCGATGAATT CATCCCGCTG GCCGAAAAGA CCGGCCTGAT CGTGCCGCTG
GGCGCGTGGG TGTTGGACGA AGCCTGTCGC CAGATGGCGC AATGGCAACG CGAGGGGCAC
AGCGGCTGGA GCGTCGCCGT GAATCTCTCC GCGCTGCAGT TCGGCCATGC CGCACTCATC
GACAGCGTGC GCGATACGCT CGCGCGCCAC GCGCTGGACC CGCGCAGCCT GACGCTGGAG
ATTACGGAGT CGACGGCCAT GCGCGACGTC GATGCGAGCC TGCAGATCCT GCAGCGGCTC
GACGCGATGG GCGTGCGGAT TTCGATCGAC GATTTCGGCA CCGGCTATTC CAGCCTGCTG
TATCTCAAGC GGTTGCCCGC CAGCGAGCTG AAAATCGACC GCGGCTTCGT GCGCGACCTG
GCGCACGACA CGGAAGACGC GGCCATCGTC TCGGCCATCG TGGCGCTGGG CCAGACGCTG
AACCTGCGCA TCGTCGCAGA GGGTGTGGAG ACGGCCGAGC AGCAGGCGTT TCTCACGCGG
CTCGGTTGTC ACTCGCTGCA GGGCTACCTG CTGGGCCGCC CGATGACGGC GGAATCGTTG
TCCGCCGCGA TGGCGTAA
|
|---|
| Protein sequence | MLASSYNPLL VLLSLFVAIL ASYTALDMAG RVVTAQGRAA LWWLIGGASA MGLGIWSMHF
VGMLALNLPI PVGYDVGITL ASLAIGIGAS TFALWLVSRR ELPWPRLVGG ALLMGAGVAG
MHYTGMAALR MNPGIQYNPG RFGVSVVIAV LASGVALWIA FRLRRQSRRV RALRAGSAVV
MGVAIVGMHY TGMSAAAFPL GSVCGAAHTG ASAEWLALVI IIVTLAVLAI ALIISVLDLR
MEARTALLAN SLAAANKELA YLALHDNLTK LSNRVLLEDR LTQAIRTAER EKHRFALMFM
DLDGFKAVND VYGHHVGDLL LIDVAQRIGA RVRQQDTVAR VGGDEFVVLA YVDDPEDAGT
LANALLEVVR EPFMAGGHEL RVSTSIGIAI YPGDGGNQHD LLTNADAAMY HAKGLGRNAY
SFFEPSMNAD VHQQLQLVQD LRRAVERHEL VLHYQPKFNA PNGPIMGVEA LVRWQHPQRG
LVPADEFIPL AEKTGLIVPL GAWVLDEACR QMAQWQREGH SGWSVAVNLS ALQFGHAALI
DSVRDTLARH ALDPRSLTLE ITESTAMRDV DASLQILQRL DAMGVRISID DFGTGYSSLL
YLKRLPASEL KIDRGFVRDL AHDTEDAAIV SAIVALGQTL NLRIVAEGVE TAEQQAFLTR
LGCHSLQGYL LGRPMTAESL SAAMA
|
|---|
| |