| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0283 |
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| Symbol | |
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| ID | 6287443 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 299866 |
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| End bp | 303531 |
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| Gene Length | 3666 bp |
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| Protein Length | 1221 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642623853 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001897876 |
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| Protein GI | 187927389 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTCAAAT ACGCAAGATT ACAAAGTCTT CATGCGCGGA TCTTCCTCGT CATATGCGCG
GCGGCATTCC CGCTGCTGAT AGGTTCTGGG TATTATTTAT ATAAGCAATC TGAGCTGGTT
CGCGTTGCTG CGCAGGTAGA GGCCAATCAA TATCTCACGC TCGCCGCAGA GTACGCGCAG
GCGGAAATTC TCGGCGCGGG AGAGGCTCTT GACGCAATTT CGGCAACGCC ATCCATACAG
AGCAGAAACT GGGCGCTTTG CAACGAGTAT CTTCATAGGC TTGTCACCCA GCGTGCAGAC
CGCTATTCCA ATATCGGCGT AGTCGATTTG AACGGAAATC TGCTTTGTAG CGGGGTCCCT
GTATCGGCGA GGACGTTATT CAATTTTGCC GATCGAACCT ATTTTCAGCT TGCTTTGAAG
CGACCTGGTT TAGCTGTTGG TGATTATCAG ACGGGGCGGC TCACTGGCCT ACCTGCCATC
TCTGTCGCCA CGGCAATGCG CGATGGGGGC GGCAAACCTT TCGCCGTCGT GTTCGCCTCA
TTAAGGCTGA CATCCCTTGA GCGTGAGAGC CCGAACTCGG TCGATAGCGA GGCCCGCATT
ACGATCCTCG ATCGAAACGG AGTGATTTTG CTGGCCTCAG ACCCCCTGAT CGGGCGGGTT
GGACAGTCTC TCCAGCGCTC CGGGTTGCGC GAAGCGTTCA TGGCACGGGC CCGCGATGTT
CGCATCTCAA CAGACGCGAC AGAGCCGTTT CGGCTGATTG GGTCCATGTC AGCCGGACCC
CGCGACGATC CATCGGCAAT CACGGTGCTC TACACGTCGC GTGGGTCGGC TGTGTTCTCC
GGCTTATATC GCGATCTAAG GCTGAGGGCG CTTGCCGCGC TCGCCTTGAT AGCGATAGCC
GTCAGTGCCG GGTGGACAGG CACAAATGCG CTGATCGGCA AGAACATTCG CCGTATCGCC
AACGCCGCAG CGCGCATGCG AGGGCGCGAT TTTCACACGC GAGTCGCCCA TGAGGTTTCG
GGTAGCGAGT TCCAGCTGAT AGCCGTGCAA CTCGATGAGA TGGCGAAGGA GTTGGAGCAG
CGGGAGCGCG AGTGGATGTC CTCGATCCAG AGGCAGTCTC ATCAAGTGGA TCTCTTGCGG
CGGATCGCGC AAACCGAACC GCTTGAAGGC ATTCTTCGCT CCATATGCGA ATTCGCCGAA
GAGCAGGTGC CCGGCGCGCA GGCATCGCTG CTGCTCGTCG ACGAAGATCG TTGCGTCACA
AGCTGCATCG CCCCCAAGCT TCCCAAGTCC TATTGCGACA GCCTCATTGG TATTCGGGCA
GTCAGCGGCG CGGGCTCTTG CGGCACGGCC ATTGCGGAGC GCAGAGTCAT TGTTTCGGAG
GACATCGAAA GCGACCCTCT GTGGGTGGAT TTTCGGACGC TTGCAACGTC ACATGGCCTG
CGCGCGTGTT GGTCGTATCC GGTCATTTCT ACCGGAGATC GAGTCTTTGG TTCGTTTGCG
CTCTATTTCA ATGAGCAAAG AGCGCCACGG CCGGACGAAC TTCCTGTCAG TCGAATGGCG
GCGGAAGTCG CTGCAGTCGC GATCGACCGA TACCAGACTG GTGAGGCGCT TGCCCAGTCC
GAGGCTGAAT ACCGCTCACT TTTCGAGACG AATCCGTATC CGATGTGGGT GTCGGAAAGC
GCGAGCGGAA AGTTTTTGGC AGTCAACGAT AGTGCGATCA AACACTACGG ATTCTCCCGT
GAGACTTTCC TGGCGATGCG GGCGAACGAT CTGGACGCAC CGGAGCAGCA CTCCCAGAAG
AGCGAACCAT CGACGGAAAG CGGCGGTGAG CGGCCGACCG TGACGAGCGG CGTCAAGCTG
CATCGTGATG CTCGCGGGGA TACACTTGAA GTGGAACTTG CATACTTTCC GCTTCGCTTT
CAGGGACGGA ACGCGACACT TGCGCTCATT TCCGATGTCA CCTACCGGAG CGCGCTGACG
CACACCATTC GTGAGCAGAA GGAGTTCTTT TCACTGCTCA TGGGTTCGAC GGTGGAAGCG
ATCTGCGGAT TGGACCAGAA CGGGTGTTGT ACCTTCGCGA ATGCTGCCTG CGAACGGCTG
CTTGGCTACT CCGCTCAGGA GCTCGCGGGT AAGCCAATGC ACGCGCTGAT ACACCACACG
CACGAAGACG GCTCCCCGTA TGAACTGGCC GCATGCCAGA TTCAGAACAG CATTGCGTCA
GGGGCGCACG TTCATGTGGA CAATGAGGTG TTCTGGAGAA GCGACGGCAC GTCACTGCCG
GTCGAGTATT GGGCCTATCC CATTGTGCGG GACGGTCAGG TGGCCGGCTC GATCGTTACC
TTCATCGAGA CGAGCGAGCG CCGCAGGCAG CAGGACGAGT TGCGCCGCCG CGCGACGTTC
GATGACTTGA CCGGGCTTCT GAATCGCCCA AGTTTCGTCA CGGCTCTCGA AACCCGACTG
CAGCAGGCAG ACGCCAGCGA GCGCCATCCC GTCGTCGCCA TCCTGGATCT TGATGGATTC
AAGGAGATCA ACGACTCACT CGGGCATGCC ACGGGCGATC AACTTCTTCG GGGCGTGGCT
GAACGACTTA CTGATCAGTT GGGTCCCCAC GCTGACGTTG GCCGTCTGGG TGGAGACGAG
TTCGCTTTCG TCGTGGACGA GAGCTATGGT CCGCCAATCG CTACGCGCAT CGAGGCGGTG
ATGGAGTCGA TTCGTCGACC GTTCAGCATC GCTGGGCTCG ACCTCGCAAT CAACGGAAGC
GTAGGGGCCG CGCGATATCC GGGAGCGGGT CTTGACGTGG ATACCCTCCT TCGCAGTGCT
GATGTCGCAA TGTATGTAGC AAAGAGGGAG GGACACGGGT TCACCTTCAC CGATAGGGTC
GATGCCGGAA CTCCACGCCC CTTTCTGCTG AGTGAATTGC GCAGGGCGCT GCAGGAGGAC
GAGTTCATCT TGCATTTCCA GCCCACAATT CCCCTCCAGG GGCTACCTCA CTTCGGTTTC
GAGGCGCTCA TTCGGTGGAA CCATCCACGG CTCGGGATCG TGGGTCCGGG CGAGTTCATG
CCGATGGTTG AAGTCAGCGA TCTGATTCAC CCGCTCACAG AGTGGGTCAT CGCCTCTGCC
GTATCGCGTT TCAAAACCAT CATCGAATCA TGGCCCAACG CGTTCGTTGC AGTGAACGTC
TCGATGCGCA ATTTGATCAA CCAGAAATTC ACTTCGAGCG TTCAGTATCT GGTCGAGCAG
AATCGATTTC CGGTGAACTG TCTCAAGATC GAAGTCACGG AAAGTGCAGT CATGGCAGAC
CCCGACCGTA CGCTGAGAGC CCTGAATGAA CTTCATGGCC TTGGTGTTCG GATCGCGGTC
GACGATTTTG GTACGGGGTA TTCCTCTCTC GCCTACCTGC AGAAGCTGCC GGTGGATGAC
CTGAAGATTG ATCGCTCCTT CGTGAGTGGT CTCTCTGGGA GCCAGCCATC AAAGGCGATC
GTGCACTCGA TCATTTCGCT GGCGCACAGT CTGGGCCTGT CGGTGACGGC GGAAGGTATT
GAGTCGGAAG CAGACATGCG GATTCTTCGC GCCGCCGGCT GCGATTTTGG GCAGGGATAC
TACATCGGCC ATCCGATGCC ATTCGATGCA GTGCATGACT GGTTGAAGTC GCGCAGCTTT
GTATAG
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| Protein sequence | MVKYARLQSL HARIFLVICA AAFPLLIGSG YYLYKQSELV RVAAQVEANQ YLTLAAEYAQ
AEILGAGEAL DAISATPSIQ SRNWALCNEY LHRLVTQRAD RYSNIGVVDL NGNLLCSGVP
VSARTLFNFA DRTYFQLALK RPGLAVGDYQ TGRLTGLPAI SVATAMRDGG GKPFAVVFAS
LRLTSLERES PNSVDSEARI TILDRNGVIL LASDPLIGRV GQSLQRSGLR EAFMARARDV
RISTDATEPF RLIGSMSAGP RDDPSAITVL YTSRGSAVFS GLYRDLRLRA LAALALIAIA
VSAGWTGTNA LIGKNIRRIA NAAARMRGRD FHTRVAHEVS GSEFQLIAVQ LDEMAKELEQ
REREWMSSIQ RQSHQVDLLR RIAQTEPLEG ILRSICEFAE EQVPGAQASL LLVDEDRCVT
SCIAPKLPKS YCDSLIGIRA VSGAGSCGTA IAERRVIVSE DIESDPLWVD FRTLATSHGL
RACWSYPVIS TGDRVFGSFA LYFNEQRAPR PDELPVSRMA AEVAAVAIDR YQTGEALAQS
EAEYRSLFET NPYPMWVSES ASGKFLAVND SAIKHYGFSR ETFLAMRAND LDAPEQHSQK
SEPSTESGGE RPTVTSGVKL HRDARGDTLE VELAYFPLRF QGRNATLALI SDVTYRSALT
HTIREQKEFF SLLMGSTVEA ICGLDQNGCC TFANAACERL LGYSAQELAG KPMHALIHHT
HEDGSPYELA ACQIQNSIAS GAHVHVDNEV FWRSDGTSLP VEYWAYPIVR DGQVAGSIVT
FIETSERRRQ QDELRRRATF DDLTGLLNRP SFVTALETRL QQADASERHP VVAILDLDGF
KEINDSLGHA TGDQLLRGVA ERLTDQLGPH ADVGRLGGDE FAFVVDESYG PPIATRIEAV
MESIRRPFSI AGLDLAINGS VGAARYPGAG LDVDTLLRSA DVAMYVAKRE GHGFTFTDRV
DAGTPRPFLL SELRRALQED EFILHFQPTI PLQGLPHFGF EALIRWNHPR LGIVGPGEFM
PMVEVSDLIH PLTEWVIASA VSRFKTIIES WPNAFVAVNV SMRNLINQKF TSSVQYLVEQ
NRFPVNCLKI EVTESAVMAD PDRTLRALNE LHGLGVRIAV DDFGTGYSSL AYLQKLPVDD
LKIDRSFVSG LSGSQPSKAI VHSIISLAHS LGLSVTAEGI ESEADMRILR AAGCDFGQGY
YIGHPMPFDA VHDWLKSRSF V
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