Gene Rpic_0230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0230 
Symbol 
ID6289667 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp243366 
End bp244295 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content63% 
IMG OID642623800 
ProductRNA polymerase factor sigma-32 
Protein accessionYP_001897824 
Protein GI187927337 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACGCAG TCATCCCCGT GAATACCGTT TCCGCAATCG CCACCCAGCC GTCCGGCAAC 
GCCGGTAATG GATGGGCACT GGCGTTCCCC GGCAACCTGG GCAACATCGA CGCCTATATC
CAGAGCGTCA ACCGTGTGCC GATGTTGTCG GCCGAAGAAG AACAGCGTCT GGCCCGCGAA
TACCGCGACA ACGACAACCT CGATGCCGCT CGCCGACTGG TGCTCTCGCA CCTGCGTCTG
GTGGTGTCGA TCGCCCGCGG CTACCTCGGC TATGGCCTGC CGCATGCCGA CCTCATCCAG
GAAGGCAACA TCGGCCTGAT GAAGGCCGTC AAGCGCTTCG ACCCGGATCA GGGCGTGCGT
CTCGTCTCAT ACGCGATGCA CTGGATCAAG GCCGAGATGC ACGAGTACAT CCTGAAGAAC
TGGCGCATGG TCAAGGTGGC CACCACCAAG GCCCAGCGCA AGCTGTTCTT CAACCTGCGC
AGTCACAAGC AGGATGCGCA GGCGACCTTC ACGTCGGACG AGATCGACGC CGTGGCGGCC
GAACTCAACG TCAAGGGCAC GGAAGTGCGC GAGATGGAAA CGCGCCTGTC CGGCGGCGAC
ATTGCGCTGG AAGGCCAGAT GGACGACGGT GAGGAGTCGT TCGCTCCCAT CGCCTACCTG
GCCGATACGC ACAACGAGCC GACCCGCGTG ATCGAAGCGC GTAGCAACGA CCGCATGCAA
AGCGAGGGCA TCGAAGCCGC CCTCGCCAAG CTGGACGATC GCAGCCGCCG CATCATCGAA
GCACGCTGGC TGAACGTGAA CGACGACGGA TCGGGCGGCT CGACGCTGCA CGAGTTGGCC
GACGAGTTTG GCGTGTCGGC TGAGCGCATT CGCCAGATCG AATCGGCCGC GATGAAAAAG
ATGAAGGGTG CGCTGCAGGC CTTCGCCTAA
 
Protein sequence
MNAVIPVNTV SAIATQPSGN AGNGWALAFP GNLGNIDAYI QSVNRVPMLS AEEEQRLARE 
YRDNDNLDAA RRLVLSHLRL VVSIARGYLG YGLPHADLIQ EGNIGLMKAV KRFDPDQGVR
LVSYAMHWIK AEMHEYILKN WRMVKVATTK AQRKLFFNLR SHKQDAQATF TSDEIDAVAA
ELNVKGTEVR EMETRLSGGD IALEGQMDDG EESFAPIAYL ADTHNEPTRV IEARSNDRMQ
SEGIEAALAK LDDRSRRIIE ARWLNVNDDG SGGSTLHELA DEFGVSAERI RQIESAAMKK
MKGALQAFA