| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0173 |
|---|
| Symbol | |
|---|
| ID | 6286509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 190508 |
|---|
| End bp | 191752 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642623744 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_001897768 |
|---|
| Protein GI | 187927281 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCCG CAACGCCCGT GGACGCGTGG CGCGAGGCCA TTCGGTGGCT CCTCGTCATC
CAGGCCCTTT CAATGGGCGC GATGGAAATG ACAGGGCCGT TCTGGCCACT GTTCCTGCGC
GAGCTGTCGC CGGTGCCGCA TGTGCCGTTC GCGTGGGTGG CGAGCGCAGC GTACTTCGCG
CCGATGGCCG CCACGCTTGT CACCGCGCCC TGGTGGGGCC GCCTGGCTGA TCGCGTCGGG
CCCAAGCCGA TGATCTTGCG AGCGCTCATC GCGCTGGCAG CGTCGCAGCT GTGGTCGGTC
CATGCGGACT CGGCGGCCAG CGTGCTGCTG GCGCGCACCG TGCAAGGCGG GCTGGCCGGC
TTTCTGGCAG CCGCACAGAT CTATGCGATG CGCGTGGCAC CTGCCGACAT GCGCCGGCGC
GTCTTCGCCG ATCTGCAGAC CGTCACGGCG TGCGGCAGCT TCATGGCTCC GCCGGTCGGC
GCATGGCTCG TCTCGTGGAT GGGCTTCCGG ATGGCCAACA CGGCGGGCGC GGTGGTGATT
CTGGCGTGCG TTCCGCTGGC GATGTTCTGC TTGCCGGGCA TCGGCCCCGC CCCGCGCAGC
GCGTCGAAAT CGACCTCCGA CATGCTGCAA TCACGGCACG CGCCCTTGAG CGGCCTGGTG
ATCGGCTTGT TGCTCGGGAC GGTAGCTGTG CAGGCGGCGC GCGTCATGCC CCAAGGCTTT
CTCGCGCCGT ACATCACCGA GACACTGCAT GGCTCGGTGA TACTGGCAGG TCTCGCCTAC
AGCGCGACGG CGGCAACACT GGCGCTGTCT GCGCGCTGGT GGGCAAAGCG GTTTGCCGGA
CTGCCCGTGC ATGTCACGCT GGGGCGCGTG TGCGCATTGA CCGCGGTATG CGGCGTCACC
GCGCTCTGGC AAGGCCTTGC GCAAGGGGAA GTCGGCTTCA TTGCCGCACG TTTGGCCTGG
GGCCTGTGCC TTGGCGGCCT GCTGCCGGTC CTCAACAGCC TGGTCGCTGA GACAAGCCCG
GAAGATCGTC AAGGTTTTGC GTTGGGATTG TGTAGTAGCG CAGCCAAGGG CGGTGCCCTC
GTCGGCTTGG GCGTGGCCGC CTGGTCGACA GGCGTGTTCG GGTGGCGCGC GGGTTTTGTC
GCCATGGCGG CGATGTACCT GGCGGCGCTG GCAGCACTGA TTGCGGTGCG GCGCGCTGCC
TCACCGCATC CCGCATCTGC TGCGGCGGGC ACTCAACGCG CGTGA
|
|---|
| Protein sequence | MSPATPVDAW REAIRWLLVI QALSMGAMEM TGPFWPLFLR ELSPVPHVPF AWVASAAYFA
PMAATLVTAP WWGRLADRVG PKPMILRALI ALAASQLWSV HADSAASVLL ARTVQGGLAG
FLAAAQIYAM RVAPADMRRR VFADLQTVTA CGSFMAPPVG AWLVSWMGFR MANTAGAVVI
LACVPLAMFC LPGIGPAPRS ASKSTSDMLQ SRHAPLSGLV IGLLLGTVAV QAARVMPQGF
LAPYITETLH GSVILAGLAY SATAATLALS ARWWAKRFAG LPVHVTLGRV CALTAVCGVT
ALWQGLAQGE VGFIAARLAW GLCLGGLLPV LNSLVAETSP EDRQGFALGL CSSAAKGGAL
VGLGVAAWST GVFGWRAGFV AMAAMYLAAL AALIAVRRAA SPHPASAAAG TQRA
|
|---|
| |