Gene Rpic_0028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0028 
Symbol 
ID6288266 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp39715 
End bp40623 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content67% 
IMG OID642623601 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_001897625 
Protein GI187927138 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.467256 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAAGC CCAGCCCCGA CCGCACCACC CGCACCGACA GCGAAGACAC GACCTTCACC 
GCCGTCCGGC CCCGCCTCTT TGCGATTGCC TATCGCATGC TCGGCAGCCG CGCTGACGCT
GAAGACGTGC TGCAAGACGC CTGGATGCGC TGGCACCAAA CCGACCAGAC CGCGCTGCAA
TCGGCCGAGG CATGGCTCGT GACGGTGGTC ACTCGCCTGT CGATCGACCG CCTGCGCGCC
GCCAAGACCG AGCGCGAAGC CTACGTCGGC TGGTGGCTGC CCGAGCCGCT GGTTGAACCC
GAAAGCCACG CCCCCACGCC CGAAACCGCC GTGGAACTGG CAGGCGATGT GTCGATGGCC
CTGCTGTGGG TGCTCGAGCG CCTGTCGCCC GAAGAGCGCG CGGCGTTTCT GATGCGCCAG
GTATTCGATC AGGATTACTC GGAGATCGCC GCCCTGCTGG GCAAGACCGA AGCCGCGTGC
CGGCAGATGG TGCACCGCGC ATCAGACCGG GTGCAGCAGG AGCGCCCGCG CTTCGATGTC
GCGCCCGATG CGCATCGGGA CTTGCTCGAG CGCTTTGCGC AAGCCTCACG CACGGGCCAA
CGCGATGCCA TCCGCGCGCT GCTGGCAGAT GACGCGCAAC TCGTGGGCGA CGGCGGCGGC
AAGGTGCCGT CGTTCACGCG CATCATTCAA GACGCCGGTC AGATCACCAA GATCTACTGC
GAGCTGGTGC GCGCCATGGG CGACGTCCGC TACGTACACG CCCGCGTGAA CGGCGAGCCC
GGCCTGCTGC GCTACGTGGA TGGCAAGCTG GAATCGGCGC AGTCGTTCGT CATCGAGAAC
GGCCAGATCG TGGCCATCTA CGTGGTGCGC AATCCGGACA AGCTGGCGCA CATCGGCATC
GGCGCATAA
 
Protein sequence
MTKPSPDRTT RTDSEDTTFT AVRPRLFAIA YRMLGSRADA EDVLQDAWMR WHQTDQTALQ 
SAEAWLVTVV TRLSIDRLRA AKTEREAYVG WWLPEPLVEP ESHAPTPETA VELAGDVSMA
LLWVLERLSP EERAAFLMRQ VFDQDYSEIA ALLGKTEAAC RQMVHRASDR VQQERPRFDV
APDAHRDLLE RFAQASRTGQ RDAIRALLAD DAQLVGDGGG KVPSFTRIIQ DAGQITKIYC
ELVRAMGDVR YVHARVNGEP GLLRYVDGKL ESAQSFVIEN GQIVAIYVVR NPDKLAHIGI
GA