| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0010 |
|---|
| Symbol | |
|---|
| ID | 6289278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 12674 |
|---|
| End bp | 13633 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642623585 |
|---|
| Product | Fimbrial protein |
|---|
| Protein accession | YP_001897609 |
|---|
| Protein GI | 187927122 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATGC ACCGGCTGGA TCTGAAAGCC ATGCGCGTGG TGGAACGGGC AGTAGCGGCG
TCGCTGGGCT TGACTGCGGC CACGTCCGCT TTCGGCGCAG ACTTCCGCCC TTTTCCTACC
GCACTCTCAC TGCCCCGGGG TGTTGCGGCT AATACCGTTG TGGCGAGAGC CTATTTGACG
CCTCAAACGT TATGTGGCGA GGGCACATGC AGGTTGGTGA ATTTCCGTCC TATTAGCCAT
GTTAATGTCG CCTCGGGTGA CGTACCGGGC TTTGTATCAA ACGGACCGAC CGTCATCACA
GAAATCAAAG GCTTGCGGAT GCAAGTCCTC GTCAATGGGG AACCACAGAC AAGGCTGGAT
GAAAATCAAC CGTCCATAAA ATTTTCTTCG CCGATCGAAA TTCAATTGCT GAGGGACGCT
TCCCCAGAGT TGGGCAACGG AACAACCGCC GATTCAATTC AGTTCTGGTT TTTCACAAAG
ACAACGTCGG GAACCAACAG GATCGATAAC TACATCCGCC TTAACACGAG GCTGACCAGA
ATCGAAGGAA GCTGCTCGGT ACCCAGTCGG ACCGTAGAGC TGCAACCCGC TCGCGTGGGA
CGCCTGACTG GTGTTGGCGC AACGGCTGGC GAGCGTAGCT TCCAGATCAA CATTGACGAC
TGCCCGAAGG GATACAACAA GATTCTCTAC AGGCTCAAGC CGGTGGGCGA CACCGTTGGG
ACGTCAGCGG GGGTATTGCC GCTTTCCGCC GAATCGACTG CCAAAGGCGT GAGGATCAGG
GTAACTGACA GTGCGGGGGC GCCTGTTGCA TTCGATACGT CGAACAGAAT CGATGCCTAC
AGCAAAGACA CCGGCGGTTC GTTTTCTATC CCGATGCGCG TGTCATACGT TCAGACCGAA
GCCAAGGTCA CGCCCGGCAC TGTGAATGGC GCCATGTCGG TGCTGATGGA GTATCAGTGA
|
|---|
| Protein sequence | MKMHRLDLKA MRVVERAVAA SLGLTAATSA FGADFRPFPT ALSLPRGVAA NTVVARAYLT
PQTLCGEGTC RLVNFRPISH VNVASGDVPG FVSNGPTVIT EIKGLRMQVL VNGEPQTRLD
ENQPSIKFSS PIEIQLLRDA SPELGNGTTA DSIQFWFFTK TTSGTNRIDN YIRLNTRLTR
IEGSCSVPSR TVELQPARVG RLTGVGATAG ERSFQINIDD CPKGYNKILY RLKPVGDTVG
TSAGVLPLSA ESTAKGVRIR VTDSAGAPVA FDTSNRIDAY SKDTGGSFSI PMRVSYVQTE
AKVTPGTVNG AMSVLMEYQ
|
|---|
| |