Gene Bphyt_3963 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3963 
Symbol 
ID6284558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp4439758 
End bp4441491 
Gene Length1734 bp 
Protein Length577 aa 
Translation table11 
GC content64% 
IMG OID642623550 
Productdihydroxy-acid dehydratase 
Protein accessionYP_001897574 
Protein GI187925932 
COG category[E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism 
COG ID[COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase 
TIGRFAM ID[TIGR00110] dihydroxy-acid dehydratase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGATT CGAACCAGAC TAAAAAGCCG CTACGCAGCC AGGCGTGGTT CGGCCTCAAG 
GACCGCGACG GTTTTCTACA TCGCTCGTGG ATGAAAAACC AGGGCATCCC GCACGACGAA
TTCGACGGAC GCCCGGTGAT CGGCATTTGC AACACGTGGT CGGAACTGAC GCCGTGCAAC
GCGCATTTTC GCGAGCTGGC GGAGTACGTG AAGAAAGGCG TGCATGAAGC CGGCGGCTTG
CCGCTCGAGT TTCCCGTGAT GTCGCTCGGC GAGACCAATT TGCGGCCTAC TGCGATGCTG
TTTCGCAACC TCGCCTCCAT GGATGTCGAG GAGTCGATTC GCGGCAATCC GATGGACGGC
GTGATTCTGC TGGTCGGCTG CGACAAGACC ACGCCCGCGC TGCTGATGGG CGCGGCGTCG
TGCAATCTGC CCGCGCTGGC CGTTTCCGGC GGCCCGATGC TCAACGGCCG GTTTCGCGGC
AAGAACATCG GCTCTGGCAC GGGCGTCTGG CAGATGTCCG AGGAAGTGCG CGCCGGCACG
ATGACGCAGG AAGAATTCAC CGAAGCCGAG TCGTGCATGA ACCGCTCGCG CGGCCACTGC
ATGACGATGG GCACGGCGTC GACCATGGCC TCGATGGTCG AATCGCTCGG CATGGGCTTG
CCGCACAACG CGGCGATTCC GGCCGTCGAC GCGCGCCGCC AGGTGCTCGC GCATCTCGCG
GGCCGGCGCA TCGTCGACAT GGTTCGCGAG GATCTGACGA TGGACAAGAT CCTCACGCGC
CAGGCCTTCG AAAACGCGAT CCGCACGAAT GCGGCGATCG GCGGCTCGAC CAATGCGGTC
GTCCATCTGA TCGCGCTGGC CAAGCGCATT GGCGTGGAGT TGTCGCTGGA GGATTGGGAG
CTGGGATCGA ACGTGCCGTG TCTCGTGAAT CTGCAACCGT CCGGTGAATA TCTGATGGAG
GACTTTTACT ACGCGGGCGG TTTGCCGGCG GTGTTGAAGC AACTCGGCGA GCAAGGGCTC
TTGCACAAAG AAGCGTTGAC CGTGAACGGC AAGACCCTTT GGGACAACGT GCGCAATGCG
GCGAATTACG ACGAGAAGGT CATCACGACC TTCGCCGAGC CGTTCAAGCC GAAGGCCGGT
ATCGCGGTGC TCAAGGGCAA CCTCGCGCCG AATGGCGCGG TGATCAAGCC GTCGGCGGCA
ACGGCGTCGT TGCTCAAGCA TCGCGGTCGC GCGGTGGTGT TCGAGAACAT CGAGGAACTG
CACGCCAAGA TTGACGACGA GTCGCTCGAT ATCGACGAGC ATTGCATCAT GGTGCTCAAG
GGCGCGGGGC CGAAGGGTTA TCCGGGCTTC GCGGAAGTCG GCAATATGCC GCTACCGAAA
AAGGTGCTGC AAAAAGGCAT CACGGACATG GTGCGCATTT CCGACGGCCG CATGAGCGGC
ACGGCGTACG GCGCGGTGGT GCTGCATGTG TCGCCGGAAG CGGCCGCGGG CGGCCCGCTC
GCGTTCGTGC AGACCGGCGA CATGATCGAA CTGGACGTCG AAGAACGCCG CCTGCACCTC
GACGTCACCG ACGAGGAACT CGCACGCCGG CGCGCCGCAT GGCAGGCGCC CGAGGCGCCA
AAACGCGGCT ACTACAAGCT CTACGTCGAG CACGTGCTGC AAGCGGACCA GGGCGCGGAT
CTCGACTTTC TGGTGGGATC GAGCGGCGCT CCGGTGCCGC GCGATTCACA CTGA
 
Protein sequence
MADSNQTKKP LRSQAWFGLK DRDGFLHRSW MKNQGIPHDE FDGRPVIGIC NTWSELTPCN 
AHFRELAEYV KKGVHEAGGL PLEFPVMSLG ETNLRPTAML FRNLASMDVE ESIRGNPMDG
VILLVGCDKT TPALLMGAAS CNLPALAVSG GPMLNGRFRG KNIGSGTGVW QMSEEVRAGT
MTQEEFTEAE SCMNRSRGHC MTMGTASTMA SMVESLGMGL PHNAAIPAVD ARRQVLAHLA
GRRIVDMVRE DLTMDKILTR QAFENAIRTN AAIGGSTNAV VHLIALAKRI GVELSLEDWE
LGSNVPCLVN LQPSGEYLME DFYYAGGLPA VLKQLGEQGL LHKEALTVNG KTLWDNVRNA
ANYDEKVITT FAEPFKPKAG IAVLKGNLAP NGAVIKPSAA TASLLKHRGR AVVFENIEEL
HAKIDDESLD IDEHCIMVLK GAGPKGYPGF AEVGNMPLPK KVLQKGITDM VRISDGRMSG
TAYGAVVLHV SPEAAAGGPL AFVQTGDMIE LDVEERRLHL DVTDEELARR RAAWQAPEAP
KRGYYKLYVE HVLQADQGAD LDFLVGSSGA PVPRDSH